# HG changeset patch
# User boris
# Date 1371150609 14400
# Node ID b4f9a4f2f65d5b707706055e4186537b263a42b1
# Parent  153d1a6e8c5e185be069cb10f9e09c786d5a49ef
Uploaded xml

diff -r 153d1a6e8c5e -r b4f9a4f2f65d hetbox.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hetbox.xml	Thu Jun 13 15:10:09 2013 -0400
@@ -0,0 +1,47 @@
+<tool id="hetbox" version="1.0" name="Minor variant boxplot">
+  <description> from allele counts</description>
+  <requirements>
+    <requirement type="package" version="2.15.0">R</requirement>
+    <requirement type="package" version="2.2.6">rpy2</requirement>
+    <requirement type="package" version="1.7.1">numpy</requirement>
+  </requirements>
+  <command interpreter="python">hetbox.py $input $outplot $outreport
+  </command>
+  <inputs>
+    <param name="input" type="data" format="tabular" label="Input allele counts"/>
+    <param name="report" type="boolean" truevalue="yes" falsevalue="no" checked="True" label="Also produce a potential contamination report" />
+  </inputs>
+  <outputs>
+    <data name="outplot" format="png"/>
+    <data name="outreport" format="tabular">
+      <filter>report is True</filter>
+    </data>
+  </outputs>
+  <stdio>
+    <exit_code range="1:" err_level="fatal"/>
+    <exit_code range=":-1" err_level="fatal"/>
+  </stdio>
+
+  <help>
+
+.. class:: infomark
+
+**What it does**
+
+Given a table with sample ids and minor alelles frequencies, generates boxplot per sample and 
+
+.. class:: infomark
+
+**Boxplot**
+
+The graphic shows the distribution of the minor allele frequencies as a boxplot per sample. At the bottom of each plot, a count (N) is given of the number of minor alleles in the plot.
+
+
+**Report**
+
+The graphic shows the distribution of the minor allele frequencies as a boxplot per sample. At the bottom of each plot, a count (N) is given of the number of minor alleles in the plot.
+
+
+
+  </help>
+</tool>
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