# HG changeset patch
# User blankenberglab
# Date 1633098252 0
# Node ID c60d0cbdc01afb3ded292c7d680c9a3a987aedf2
# Parent  f80b9af92d9734637ca70d67eb9da665cdba51e3
"planemo upload for repository https://github.com/blankenberglab/galaxy-tools-blankenberg/tree/main/data_managers/data_manager_refgenie_pull commit 2b81f6b9cadf15796ef7f1f6a0d12f05d3f405d7"

diff -r f80b9af92d97 -r c60d0cbdc01a data_manager/data_manager_refgenie_pull.py
--- a/data_manager/data_manager_refgenie_pull.py	Fri Sep 10 16:13:26 2021 +0000
+++ b/data_manager/data_manager_refgenie_pull.py	Fri Oct 01 14:24:12 2021 +0000
@@ -14,7 +14,10 @@
 
 
 def galaxy_code_get_refgenie_assets(refgenie_config_file):
-    rgc = refgenconf.RefGenConf(refgenie_config_file)
+    try:
+        rgc = refgenconf.RefGenConf(refgenie_config_file, writable=False, skip_read_lock=True)
+    except refgenconf.exceptions.RefgenconfError as e:
+        return[{'name': str(e), 'value': 'ERROR', 'options': [], 'selected': False}]
     rval = []
     for urlname, genomes in rgc.listr().items():
         urlname_64 = urlsafe_b64encode(bytes(urlname, 'utf8')).decode('utf8')