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comparison plink2.xml @ 1:2a8c426ab5bc draft default tip

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Uploaded
author blankenberg
date Wed, 25 Nov 2020 02:36:32 +0000
parents 46f45544839f
children
comparison
equal deleted inserted replaced
0:46f45544839f 1:2a8c426ab5bc
3329 <when value="no_set"> 3329 <when value="no_set">
3330 </when> 3330 </when>
3331 3331
3332 <when value="from_list"> 3332 <when value="from_list">
3333 <param name="haps_MOD_1" type="select" label="Select value"> 3333 <param name="haps_MOD_1" type="select" label="Select value">
3334 <option value="{ref-first">{ref-first</option> 3334 <option value="{ref-first"><![CDATA[{ref-first]]></option>
3335 <option value="ref-last}">ref-last}</option> 3335 <option value="ref-last}"><![CDATA[ref-last}]]></option>
3336 </param> 3336 </param>
3337 </when> 3337 </when>
3338 </conditional> 3338 </conditional>
3339 </when> 3339 </when>
3340 </conditional> 3340 </conditional>
3389 <when value="no_set"> 3389 <when value="no_set">
3390 </when> 3390 </when>
3391 3391
3392 <when value="from_list"> 3392 <when value="from_list">
3393 <param name="import_dosage_MOD_8" type="select" label="Select value"> 3393 <param name="import_dosage_MOD_8" type="select" label="Select value">
3394 <option value="{ref-first">{ref-first</option> 3394 <option value="{ref-first"><![CDATA[{ref-first]]></option>
3395 <option value="ref-last}">ref-last}</option> 3395 <option value="ref-last}"><![CDATA[ref-last}]]></option>
3396 </param> 3396 </param>
3397 </when> 3397 </when>
3398 </conditional> 3398 </conditional>
3399 <param name="import_dosage_MOD_9_0" type="text" label="'single-chr='&lt;code&gt;" value="" optional="False" argument="'single-chr='&lt;code&gt;" help=""/> 3399 <param name="import_dosage_MOD_9_0" type="text" label="'single-chr='&lt;code&gt;" value="" optional="False" argument="'single-chr='&lt;code&gt;" help=""/>
3400 <param name="import_dosage_MOD_10_0" type="text" label="'chr-col-num='&lt;#&gt;" value="" optional="False" argument="'chr-col-num='&lt;#&gt;" help=""/> 3400 <param name="import_dosage_MOD_10_0" type="text" label="'chr-col-num='&lt;#&gt;" value="" optional="False" argument="'chr-col-num='&lt;#&gt;" help=""/>
3423 <when value="no_set"> 3423 <when value="no_set">
3424 </when> 3424 </when>
3425 3425
3426 <when value="from_list"> 3426 <when value="from_list">
3427 <param name="dummy_MOD_4" type="select" label="Select value"> 3427 <param name="dummy_MOD_4" type="select" label="Select value">
3428 <option value="{acgt">{acgt</option> 3428 <option value="{acgt"><![CDATA[{acgt]]></option>
3429 <option value="1234">1234</option> 3429 <option value="1234"><![CDATA[1234]]></option>
3430 <option value="12}">12}</option> 3430 <option value="12}"><![CDATA[12}]]></option>
3431 </param> 3431 </param>
3432 </when> 3432 </when>
3433 </conditional> 3433 </conditional>
3434 <param name="dummy_MOD_5_0" type="text" label="'pheno-ct='&lt;count&gt;" value="" optional="False" argument="'pheno-ct='&lt;count&gt;" help=""/> 3434 <param name="dummy_MOD_5_0" type="text" label="'pheno-ct='&lt;count&gt;" value="" optional="False" argument="'pheno-ct='&lt;count&gt;" help=""/>
3435 <param name="dummy_MOD_6_0" type="text" label="'scalar-pheno'" value="" optional="False" argument="'scalar-pheno'" help=""/> 3435 <param name="dummy_MOD_6_0" type="text" label="'scalar-pheno'" value="" optional="False" argument="'scalar-pheno'" help=""/>
3565 <when value="no_set"> 3565 <when value="no_set">
3566 </when> 3566 </when>
3567 3567
3568 <when value="from_list"> 3568 <when value="from_list">
3569 <param name="export_MOD_1" type="select" label="Select value"> 3569 <param name="export_MOD_1" type="select" label="Select value">
3570 <option value="{01">{01</option> 3570 <option value="{01"><![CDATA[{01]]></option>
3571 <option value="12}">12}</option> 3571 <option value="12}"><![CDATA[12}]]></option>
3572 </param> 3572 </param>
3573 </when> 3573 </when>
3574 </conditional> 3574 </conditional>
3575 <param name="export_MOD_2_0" type="text" label="'bgz'" value="" optional="False" argument="'bgz'" help=""/> 3575 <param name="export_MOD_2_0" type="text" label="'bgz'" value="" optional="False" argument="'bgz'" help=""/>
3576 <param name="export_MOD_3_0" type="text" label="'id-delim='&lt;char&gt;" value="" optional="False" argument="'id-delim='&lt;char&gt;" help=""/> 3576 <param name="export_MOD_3_0" type="text" label="'id-delim='&lt;char&gt;" value="" optional="False" argument="'id-delim='&lt;char&gt;" help=""/>
3643 <when value="no_set"> 3643 <when value="no_set">
3644 </when> 3644 </when>
3645 3645
3646 <when value="from_list"> 3646 <when value="from_list">
3647 <param name="missing_MOD_1" type="select" label="Select value"> 3647 <param name="missing_MOD_1" type="select" label="Select value">
3648 <option value="{sample-only">{sample-only</option> 3648 <option value="{sample-only"><![CDATA[{sample-only]]></option>
3649 <option value="variant-only}">variant-only}</option> 3649 <option value="variant-only}"><![CDATA[variant-only}]]></option>
3650 </param> 3650 </param>
3651 </when> 3651 </when>
3652 </conditional> 3652 </conditional>
3653 <param name="missing_MOD_2_0" type="text" label="'scols='&lt;column set descriptor&gt;" value="" optional="False" argument="'scols='&lt;column set descriptor&gt;" help=""/> 3653 <param name="missing_MOD_2_0" type="text" label="'scols='&lt;column set descriptor&gt;" value="" optional="False" argument="'scols='&lt;column set descriptor&gt;" help=""/>
3654 <param name="missing_MOD_3_0" type="text" label="'vcols='&lt;column set descriptor&gt;" value="" optional="False" argument="'vcols='&lt;column set descriptor&gt;" help=""/> 3654 <param name="missing_MOD_3_0" type="text" label="'vcols='&lt;column set descriptor&gt;" value="" optional="False" argument="'vcols='&lt;column set descriptor&gt;" help=""/>
3725 <when value="no_set"> 3725 <when value="no_set">
3726 </when> 3726 </when>
3727 3727
3728 <when value="from_list"> 3728 <when value="from_list">
3729 <param name="sample_diff_MOD_1" type="select" label="Select value"> 3729 <param name="sample_diff_MOD_1" type="select" label="Select value">
3730 <option value="'dosage'">'dosage'</option> 3730 <option value="'dosage'"><![CDATA['dosage']]></option>
3731 <option value="'dosage='&lt;tolerance&gt;">'dosage='<tolerance></option> 3731 <option value="'dosage='&lt;tolerance&gt;"><![CDATA['dosage='<tolerance>]]></option>
3732 </param> 3732 </param>
3733 </when> 3733 </when>
3734 </conditional> 3734 </conditional>
3735 <param name="sample_diff_MOD_2_0" type="text" label="'include-missing'" value="" optional="False" argument="'include-missing'" help=""/> 3735 <param name="sample_diff_MOD_2_0" type="text" label="'include-missing'" value="" optional="False" argument="'include-missing'" help=""/>
3736 <conditional name="CONDITIONAL_sample_diff_MOD_3"> 3736 <conditional name="CONDITIONAL_sample_diff_MOD_3">
3742 <when value="no_set"> 3742 <when value="no_set">
3743 </when> 3743 </when>
3744 3744
3745 <when value="from_list"> 3745 <when value="from_list">
3746 <param name="sample_diff_MOD_3" type="select" label="Select value"> 3746 <param name="sample_diff_MOD_3" type="select" label="Select value">
3747 <option value="{pairwise">{pairwise</option> 3747 <option value="{pairwise"><![CDATA[{pairwise]]></option>
3748 <option value="counts-only}">counts-only}</option> 3748 <option value="counts-only}"><![CDATA[counts-only}]]></option>
3749 </param> 3749 </param>
3750 </when> 3750 </when>
3751 </conditional> 3751 </conditional>
3752 <param name="sample_diff_MOD_4_0" type="text" label="'fname-id-delim='&lt;c&gt;" value="" optional="False" argument="'fname-id-delim='&lt;c&gt;" help=""/> 3752 <param name="sample_diff_MOD_4_0" type="text" label="'fname-id-delim='&lt;c&gt;" value="" optional="False" argument="'fname-id-delim='&lt;c&gt;" help=""/>
3753 <param name="sample_diff_MOD_5_0" type="text" label="'zs'" value="" optional="False" argument="'zs'" help=""/> 3753 <param name="sample_diff_MOD_5_0" type="text" label="'zs'" value="" optional="False" argument="'zs'" help=""/>
3762 <when value="no_set"> 3762 <when value="no_set">
3763 </when> 3763 </when>
3764 3764
3765 <when value="from_list"> 3765 <when value="from_list">
3766 <param name="sample_diff_MOD_8" type="select" label="Select value"> 3766 <param name="sample_diff_MOD_8" type="select" label="Select value">
3767 <option value="base=">base=</option> 3767 <option value="base="><![CDATA[base=]]></option>
3768 <option value="ids=">ids=</option> 3768 <option value="ids="><![CDATA[ids=]]></option>
3769 </param> 3769 </param>
3770 </when> 3770 </when>
3771 </conditional> 3771 </conditional>
3772 <param name="sample_diff_MOD_9_0" type="text" label="sample ID" value="" optional="True" argument="sample ID" help=""/> 3772 <param name="sample_diff_MOD_9_0" type="text" label="sample ID" value="" optional="True" argument="sample ID" help=""/>
3773 <param name="sample_diff_MOD_10_0" type="text" label="other sample ID(s)..." value="" optional="False" argument="other sample ID(s)..." help="Multiple values are allowed"/> 3773 <param name="sample_diff_MOD_10_0" type="text" label="other sample ID(s)..." value="" optional="False" argument="other sample ID(s)..." help="Multiple values are allowed"/>
3795 <when value="no_set"> 3795 <when value="no_set">
3796 </when> 3796 </when>
3797 3797
3798 <when value="from_list"> 3798 <when value="from_list">
3799 <param name="sample_diff_MOD_1" type="select" label="Select value"> 3799 <param name="sample_diff_MOD_1" type="select" label="Select value">
3800 <option value="'dosage'">'dosage'</option> 3800 <option value="'dosage'"><![CDATA['dosage']]></option>
3801 <option value="'dosage='&lt;tolerance&gt;">'dosage='<tolerance></option> 3801 <option value="'dosage='&lt;tolerance&gt;"><![CDATA['dosage='<tolerance>]]></option>
3802 </param> 3802 </param>
3803 </when> 3803 </when>
3804 </conditional> 3804 </conditional>
3805 <param name="sample_diff_MOD_2_0" type="text" label="'include-missing'" value="" optional="False" argument="'include-missing'" help=""/> 3805 <param name="sample_diff_MOD_2_0" type="text" label="'include-missing'" value="" optional="False" argument="'include-missing'" help=""/>
3806 <conditional name="CONDITIONAL_sample_diff_MOD_3"> 3806 <conditional name="CONDITIONAL_sample_diff_MOD_3">
3812 <when value="no_set"> 3812 <when value="no_set">
3813 </when> 3813 </when>
3814 3814
3815 <when value="from_list"> 3815 <when value="from_list">
3816 <param name="sample_diff_MOD_3" type="select" label="Select value"> 3816 <param name="sample_diff_MOD_3" type="select" label="Select value">
3817 <option value="{pairwise">{pairwise</option> 3817 <option value="{pairwise"><![CDATA[{pairwise]]></option>
3818 <option value="counts-only}">counts-only}</option> 3818 <option value="counts-only}"><![CDATA[counts-only}]]></option>
3819 </param> 3819 </param>
3820 </when> 3820 </when>
3821 </conditional> 3821 </conditional>
3822 <param name="sample_diff_MOD_4_0" type="text" label="'fname-id-delim='&lt;c&gt;" value="" optional="False" argument="'fname-id-delim='&lt;c&gt;" help=""/> 3822 <param name="sample_diff_MOD_4_0" type="text" label="'fname-id-delim='&lt;c&gt;" value="" optional="False" argument="'fname-id-delim='&lt;c&gt;" help=""/>
3823 <param name="sample_diff_MOD_5_0" type="text" label="'zs'" value="" optional="False" argument="'zs'" help=""/> 3823 <param name="sample_diff_MOD_5_0" type="text" label="'zs'" value="" optional="False" argument="'zs'" help=""/>
3846 <when value="no_set"> 3846 <when value="no_set">
3847 </when> 3847 </when>
3848 3848
3849 <when value="from_list"> 3849 <when value="from_list">
3850 <param name="make_king_MOD_0" type="select" label="Select value"> 3850 <param name="make_king_MOD_0" type="select" label="Select value">
3851 <option value="{square">{square</option> 3851 <option value="{square"><![CDATA[{square]]></option>
3852 <option value="square0">square0</option> 3852 <option value="square0"><![CDATA[square0]]></option>
3853 <option value="triangle}">triangle}</option> 3853 <option value="triangle}"><![CDATA[triangle}]]></option>
3854 </param> 3854 </param>
3855 </when> 3855 </when>
3856 </conditional> 3856 </conditional>
3857 <conditional name="CONDITIONAL_make_king_MOD_1"> 3857 <conditional name="CONDITIONAL_make_king_MOD_1">
3858 <param name="CONDITIONAL_SELECT_make_king_MOD_1" type="select" label="How to set Make king"> 3858 <param name="CONDITIONAL_SELECT_make_king_MOD_1" type="select" label="How to set Make king">
3863 <when value="no_set"> 3863 <when value="no_set">
3864 </when> 3864 </when>
3865 3865
3866 <when value="from_list"> 3866 <when value="from_list">
3867 <param name="make_king_MOD_1" type="select" label="Select value"> 3867 <param name="make_king_MOD_1" type="select" label="Select value">
3868 <option value="{zs">{zs</option> 3868 <option value="{zs"><![CDATA[{zs]]></option>
3869 <option value="bin">bin</option> 3869 <option value="bin"><![CDATA[bin]]></option>
3870 <option value="bin4}">bin4}</option> 3870 <option value="bin4}"><![CDATA[bin4}]]></option>
3871 </param> 3871 </param>
3872 </when> 3872 </when>
3873 </conditional> 3873 </conditional>
3874 </when> 3874 </when>
3875 </conditional> 3875 </conditional>
3908 <when value="no_set"> 3908 <when value="no_set">
3909 </when> 3909 </when>
3910 3910
3911 <when value="from_list"> 3911 <when value="from_list">
3912 <param name="make_rel_MOD_2" type="select" label="Select value"> 3912 <param name="make_rel_MOD_2" type="select" label="Select value">
3913 <option value="{square">{square</option> 3913 <option value="{square"><![CDATA[{square]]></option>
3914 <option value="square0">square0</option> 3914 <option value="square0"><![CDATA[square0]]></option>
3915 <option value="triangle}">triangle}</option> 3915 <option value="triangle}"><![CDATA[triangle}]]></option>
3916 </param> 3916 </param>
3917 </when> 3917 </when>
3918 </conditional> 3918 </conditional>
3919 <conditional name="CONDITIONAL_make_rel_MOD_3"> 3919 <conditional name="CONDITIONAL_make_rel_MOD_3">
3920 <param name="CONDITIONAL_SELECT_make_rel_MOD_3" type="select" label="How to set Make rel"> 3920 <param name="CONDITIONAL_SELECT_make_rel_MOD_3" type="select" label="How to set Make rel">
3925 <when value="no_set"> 3925 <when value="no_set">
3926 </when> 3926 </when>
3927 3927
3928 <when value="from_list"> 3928 <when value="from_list">
3929 <param name="make_rel_MOD_3" type="select" label="Select value"> 3929 <param name="make_rel_MOD_3" type="select" label="Select value">
3930 <option value="{zs">{zs</option> 3930 <option value="{zs"><![CDATA[{zs]]></option>
3931 <option value="bin">bin</option> 3931 <option value="bin"><![CDATA[bin]]></option>
3932 <option value="bin4}">bin4}</option> 3932 <option value="bin4}"><![CDATA[bin4}]]></option>
3933 </param> 3933 </param>
3934 </when> 3934 </when>
3935 </conditional> 3935 </conditional>
3936 </when> 3936 </when>
3937 </conditional> 3937 </conditional>
3956 <when value="no_set"> 3956 <when value="no_set">
3957 </when> 3957 </when>
3958 3958
3959 <when value="from_list"> 3959 <when value="from_list">
3960 <param name="make_grm_list_MOD_3" type="select" label="Select value"> 3960 <param name="make_grm_list_MOD_3" type="select" label="Select value">
3961 <option value="{id-header">{id-header</option> 3961 <option value="{id-header"><![CDATA[{id-header]]></option>
3962 <option value="iid-only}">iid-only}</option> 3962 <option value="iid-only}"><![CDATA[iid-only}]]></option>
3963 </param> 3963 </param>
3964 </when> 3964 </when>
3965 </conditional> 3965 </conditional>
3966 </when> 3966 </when>
3967 </conditional> 3967 </conditional>
3985 <when value="no_set"> 3985 <when value="no_set">
3986 </when> 3986 </when>
3987 3987
3988 <when value="from_list"> 3988 <when value="from_list">
3989 <param name="make_grm_bin_MOD_2" type="select" label="Select value"> 3989 <param name="make_grm_bin_MOD_2" type="select" label="Select value">
3990 <option value="{id-header">{id-header</option> 3990 <option value="{id-header"><![CDATA[{id-header]]></option>
3991 <option value="iid-only}">iid-only}</option> 3991 <option value="iid-only}"><![CDATA[iid-only}]]></option>
3992 </param> 3992 </param>
3993 </when> 3993 </when>
3994 </conditional> 3994 </conditional>
3995 </when> 3995 </when>
3996 </conditional> 3996 </conditional>
4020 <when value="no_set"> 4020 <when value="no_set">
4021 </when> 4021 </when>
4022 4022
4023 <when value="from_list"> 4023 <when value="from_list">
4024 <param name="pca_MOD_1" type="select" label="Select value"> 4024 <param name="pca_MOD_1" type="select" label="Select value">
4025 <option value="{approx">{approx</option> 4025 <option value="{approx"><![CDATA[{approx]]></option>
4026 <option value="meanimpute}">meanimpute}</option> 4026 <option value="meanimpute}"><![CDATA[meanimpute}]]></option>
4027 </param> 4027 </param>
4028 </when> 4028 </when>
4029 </conditional> 4029 </conditional>
4030 <param name="pca_MOD_2_0" type="text" label="'scols='&lt;col set descriptor&gt;" value="" optional="False" argument="'scols='&lt;col set descriptor&gt;" help=""/> 4030 <param name="pca_MOD_2_0" type="text" label="'scols='&lt;col set descriptor&gt;" value="" optional="False" argument="'scols='&lt;col set descriptor&gt;" help=""/>
4031 </when> 4031 </when>
4051 <when value="no_set"> 4051 <when value="no_set">
4052 </when> 4052 </when>
4053 4053
4054 <when value="from_list"> 4054 <when value="from_list">
4055 <param name="pca_MOD_0" type="select" label="Select value"> 4055 <param name="pca_MOD_0" type="select" label="Select value">
4056 <option value="{biallelic-var-wts">{biallelic-var-wts</option> 4056 <option value="{biallelic-var-wts"><![CDATA[{biallelic-var-wts]]></option>
4057 <option value="var-wts}">var-wts}</option> 4057 <option value="var-wts}"><![CDATA[var-wts}]]></option>
4058 </param> 4058 </param>
4059 </when> 4059 </when>
4060 </conditional> 4060 </conditional>
4061 <param name="pca_MOD_1_0" type="text" label="count" value="" optional="False" argument="count" help=""/> 4061 <param name="pca_MOD_1_0" type="text" label="count" value="" optional="False" argument="count" help=""/>
4062 <conditional name="CONDITIONAL_pca_MOD_2"> 4062 <conditional name="CONDITIONAL_pca_MOD_2">
4068 <when value="no_set"> 4068 <when value="no_set">
4069 </when> 4069 </when>
4070 4070
4071 <when value="from_list"> 4071 <when value="from_list">
4072 <param name="pca_MOD_2" type="select" label="Select value"> 4072 <param name="pca_MOD_2" type="select" label="Select value">
4073 <option value="{approx">{approx</option> 4073 <option value="{approx"><![CDATA[{approx]]></option>
4074 <option value="meanimpute}">meanimpute}</option> 4074 <option value="meanimpute}"><![CDATA[meanimpute}]]></option>
4075 </param> 4075 </param>
4076 </when> 4076 </when>
4077 </conditional> 4077 </conditional>
4078 <param name="pca_MOD_3_0" type="text" label="'vzs'" value="" optional="False" argument="'vzs'" help=""/> 4078 <param name="pca_MOD_3_0" type="text" label="'vzs'" value="" optional="False" argument="'vzs'" help=""/>
4079 </when> 4079 </when>
4138 <when value="no_set"> 4138 <when value="no_set">
4139 </when> 4139 </when>
4140 4140
4141 <when value="from_list"> 4141 <when value="from_list">
4142 <param name="glm_MOD_2" type="select" label="Select value"> 4142 <param name="glm_MOD_2" type="select" label="Select value">
4143 <option value="{sex">{sex</option> 4143 <option value="{sex"><![CDATA[{sex]]></option>
4144 <option value="no-x-sex}">no-x-sex}</option> 4144 <option value="no-x-sex}"><![CDATA[no-x-sex}]]></option>
4145 </param> 4145 </param>
4146 </when> 4146 </when>
4147 </conditional> 4147 </conditional>
4148 <param name="glm_MOD_3_0" type="text" label="'log10'" value="" optional="False" argument="'log10'" help=""/> 4148 <param name="glm_MOD_3_0" type="text" label="'log10'" value="" optional="False" argument="'log10'" help=""/>
4149 <param name="glm_MOD_4_0" type="text" label="'pheno-ids'" value="" optional="False" argument="'pheno-ids'" help=""/> 4149 <param name="glm_MOD_4_0" type="text" label="'pheno-ids'" value="" optional="False" argument="'pheno-ids'" help=""/>
4171 <when value="no_set"> 4171 <when value="no_set">
4172 </when> 4172 </when>
4173 4173
4174 <when value="from_list"> 4174 <when value="from_list">
4175 <param name="score_MOD_4" type="select" label="Select value"> 4175 <param name="score_MOD_4" type="select" label="Select value">
4176 <option value="{header">{header</option> 4176 <option value="{header"><![CDATA[{header]]></option>
4177 <option value="header-read}">header-read}</option> 4177 <option value="header-read}"><![CDATA[header-read}]]></option>
4178 </param> 4178 </param>
4179 </when> 4179 </when>
4180 </conditional> 4180 </conditional>
4181 <conditional name="CONDITIONAL_score_MOD_5"> 4181 <conditional name="CONDITIONAL_score_MOD_5">
4182 <param name="CONDITIONAL_SELECT_score_MOD_5" type="select" label="How to set Score"> 4182 <param name="CONDITIONAL_SELECT_score_MOD_5" type="select" label="How to set Score">
4187 <when value="no_set"> 4187 <when value="no_set">
4188 </when> 4188 </when>
4189 4189
4190 <when value="from_list"> 4190 <when value="from_list">
4191 <param name="score_MOD_5" type="select" label="Select value"> 4191 <param name="score_MOD_5" type="select" label="Select value">
4192 <option value="{center">{center</option> 4192 <option value="{center"><![CDATA[{center]]></option>
4193 <option value="variance-standardize">variance-standardize</option> 4193 <option value="variance-standardize"><![CDATA[variance-standardize]]></option>
4194 <option value="dominant">dominant</option> 4194 <option value="dominant"><![CDATA[dominant]]></option>
4195 <option value="recessive}">recessive}</option> 4195 <option value="recessive}"><![CDATA[recessive}]]></option>
4196 </param> 4196 </param>
4197 </when> 4197 </when>
4198 </conditional> 4198 </conditional>
4199 <param name="score_MOD_6_0" type="text" label="'no-mean-imputation'" value="" optional="False" argument="'no-mean-imputation'" help=""/> 4199 <param name="score_MOD_6_0" type="text" label="'no-mean-imputation'" value="" optional="False" argument="'no-mean-imputation'" help=""/>
4200 <param name="score_MOD_7_0" type="text" label="'se'" value="" optional="False" argument="'se'" help=""/> 4200 <param name="score_MOD_7_0" type="text" label="'se'" value="" optional="False" argument="'se'" help=""/>
4209 <when value="no_set"> 4209 <when value="no_set">
4210 </when> 4210 </when>
4211 4211
4212 <when value="from_list"> 4212 <when value="from_list">
4213 <param name="score_MOD_10" type="select" label="Select value"> 4213 <param name="score_MOD_10" type="select" label="Select value">
4214 <option value="{list-variants">{list-variants</option> 4214 <option value="{list-variants"><![CDATA[{list-variants]]></option>
4215 <option value="list-variants-zs}">list-variants-zs}</option> 4215 <option value="list-variants-zs}"><![CDATA[list-variants-zs}]]></option>
4216 </param> 4216 </param>
4217 </when> 4217 </when>
4218 </conditional> 4218 </conditional>
4219 <param name="score_MOD_11_0" type="text" label="'cols='&lt;col set descriptor&gt;" value="" optional="False" argument="'cols='&lt;col set descriptor&gt;" help=""/> 4219 <param name="score_MOD_11_0" type="text" label="'cols='&lt;col set descriptor&gt;" value="" optional="False" argument="'cols='&lt;col set descriptor&gt;" help=""/>
4220 </when> 4220 </when>
4239 <when value="no_set"> 4239 <when value="no_set">
4240 </when> 4240 </when>
4241 4241
4242 <when value="from_list"> 4242 <when value="from_list">
4243 <param name="variant_score_MOD_2" type="select" label="Select value"> 4243 <param name="variant_score_MOD_2" type="select" label="Select value">
4244 <option value="'bin'">'bin'</option> 4244 <option value="'bin'"><![CDATA['bin']]></option>
4245 <option value="'cols='&lt;col set descriptor&gt;">'cols='<col set descriptor></option> 4245 <option value="'cols='&lt;col set descriptor&gt;"><![CDATA['cols='<col set descriptor>]]></option>
4246 </param> 4246 </param>
4247 </when> 4247 </when>
4248 </conditional> 4248 </conditional>
4249 </when> 4249 </when>
4250 </conditional> 4250 </conditional>
5019 <when value="no_set"> 5019 <when value="no_set">
5020 </when> 5020 </when>
5021 5021
5022 <when value="from_list"> 5022 <when value="from_list">
5023 <param name="extract_MOD_0" type="select" label="Select value"> 5023 <param name="extract_MOD_0" type="select" label="Select value">
5024 <option value="{bed0">{bed0</option> 5024 <option value="{bed0"><![CDATA[{bed0]]></option>
5025 <option value="bed1}">bed1}</option> 5025 <option value="bed1}"><![CDATA[bed1}]]></option>
5026 </param> 5026 </param>
5027 </when> 5027 </when>
5028 </conditional> 5028 </conditional>
5029 <param name="extract_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/> 5029 <param name="extract_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/>
5030 </when> 5030 </when>
5047 <when value="no_set"> 5047 <when value="no_set">
5048 </when> 5048 </when>
5049 5049
5050 <when value="from_list"> 5050 <when value="from_list">
5051 <param name="exclude_MOD_0" type="select" label="Select value"> 5051 <param name="exclude_MOD_0" type="select" label="Select value">
5052 <option value="{bed0">{bed0</option> 5052 <option value="{bed0"><![CDATA[{bed0]]></option>
5053 <option value="bed1}">bed1}</option> 5053 <option value="bed1}"><![CDATA[bed1}]]></option>
5054 </param> 5054 </param>
5055 </when> 5055 </when>
5056 </conditional> 5056 </conditional>
5057 <param name="exclude_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/> 5057 <param name="exclude_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/>
5058 </when> 5058 </when>
5075 <when value="no_set"> 5075 <when value="no_set">
5076 </when> 5076 </when>
5077 5077
5078 <when value="from_list"> 5078 <when value="from_list">
5079 <param name="extract_intersect_MOD_0" type="select" label="Select value"> 5079 <param name="extract_intersect_MOD_0" type="select" label="Select value">
5080 <option value="{bed0">{bed0</option> 5080 <option value="{bed0"><![CDATA[{bed0]]></option>
5081 <option value="bed1}">bed1}</option> 5081 <option value="bed1}"><![CDATA[bed1}]]></option>
5082 </param> 5082 </param>
5083 </when> 5083 </when>
5084 </conditional> 5084 </conditional>
5085 <param name="extract_intersect_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/> 5085 <param name="extract_intersect_MOD_1_0" type="text" label="f..." value="" optional="True" argument="f..." help="Multiple values are allowed"/>
5086 </when> 5086 </when>
5175 <when value="no_set"> 5175 <when value="no_set">
5176 </when> 5176 </when>
5177 5177
5178 <when value="from_list"> 5178 <when value="from_list">
5179 <param name="split_cat_pheno_MOD_0" type="select" label="Select value"> 5179 <param name="split_cat_pheno_MOD_0" type="select" label="Select value">
5180 <option value="{omit-most">{omit-most</option> 5180 <option value="{omit-most"><![CDATA[{omit-most]]></option>
5181 <option value="omit-last}">omit-last}</option> 5181 <option value="omit-last}"><![CDATA[omit-last}]]></option>
5182 </param> 5182 </param>
5183 </when> 5183 </when>
5184 </conditional> 5184 </conditional>
5185 <param name="split_cat_pheno_MOD_1_0" type="text" label="'covar-01'" value="" optional="False" argument="'covar-01'" help=""/> 5185 <param name="split_cat_pheno_MOD_1_0" type="text" label="'covar-01'" value="" optional="False" argument="'covar-01'" help=""/>
5186 <param name="split_cat_pheno_MOD_2_0" type="text" label="cat. pheno/covar name(s)..." value="" optional="False" argument="cat. pheno/covar name(s)..." help="Multiple values are allowed"/> 5186 <param name="split_cat_pheno_MOD_2_0" type="text" label="cat. pheno/covar name(s)..." value="" optional="False" argument="cat. pheno/covar name(s)..." help="Multiple values are allowed"/>
5611 <when value="no_set"> 5611 <when value="no_set">
5612 </when> 5612 </when>
5613 5613
5614 <when value="from_list"> 5614 <when value="from_list">
5615 <param name="geno_MOD_1" type="select" label="Select value"> 5615 <param name="geno_MOD_1" type="select" label="Select value">
5616 <option value="{dosage">{dosage</option> 5616 <option value="{dosage"><![CDATA[{dosage]]></option>
5617 <option value="hh-missing}">hh-missing}</option> 5617 <option value="hh-missing}"><![CDATA[hh-missing}]]></option>
5618 </param> 5618 </param>
5619 </when> 5619 </when>
5620 </conditional> 5620 </conditional>
5621 </when> 5621 </when>
5622 </conditional> 5622 </conditional>
5639 <when value="no_set"> 5639 <when value="no_set">
5640 </when> 5640 </when>
5641 5641
5642 <when value="from_list"> 5642 <when value="from_list">
5643 <param name="mind_MOD_1" type="select" label="Select value"> 5643 <param name="mind_MOD_1" type="select" label="Select value">
5644 <option value="{dosage">{dosage</option> 5644 <option value="{dosage"><![CDATA[{dosage]]></option>
5645 <option value="hh-missing}">hh-missing}</option> 5645 <option value="hh-missing}"><![CDATA[hh-missing}]]></option>
5646 </param> 5646 </param>
5647 </when> 5647 </when>
5648 </conditional> 5648 </conditional>
5649 </when> 5649 </when>
5650 </conditional> 5650 </conditional>
6160 <when value="no_set"> 6160 <when value="no_set">
6161 </when> 6161 </when>
6162 6162
6163 <when value="from_list"> 6163 <when value="from_list">
6164 <param name="new_id_max_allele_len_MOD_1" type="select" label="Select value"> 6164 <param name="new_id_max_allele_len_MOD_1" type="select" label="Select value">
6165 <option value="{error">{error</option> 6165 <option value="{error"><![CDATA[{error]]></option>
6166 <option value="missing">missing</option> 6166 <option value="missing"><![CDATA[missing]]></option>
6167 <option value="truncate}">truncate}</option> 6167 <option value="truncate}"><![CDATA[truncate}]]></option>
6168 </param> 6168 </param>
6169 </when> 6169 </when>
6170 </conditional> 6170 </conditional>
6171 </when> 6171 </when>
6172 </conditional> 6172 </conditional>
6232 <when value="no_set"> 6232 <when value="no_set">
6233 </when> 6233 </when>
6234 6234
6235 <when value="from_list"> 6235 <when value="from_list">
6236 <param name="recover_var_ids_MOD_2" type="select" label="Select value"> 6236 <param name="recover_var_ids_MOD_2" type="select" label="Select value">
6237 <option value="{rigid">{rigid</option> 6237 <option value="{rigid"><![CDATA[{rigid]]></option>
6238 <option value="force}">force}</option> 6238 <option value="force}"><![CDATA[force}]]></option>
6239 </param> 6239 </param>
6240 </when> 6240 </when>
6241 </conditional> 6241 </conditional>
6242 <param name="recover_var_ids_MOD_3_0" type="text" label="'partial'" value="" optional="False" argument="'partial'" help=""/> 6242 <param name="recover_var_ids_MOD_3_0" type="text" label="'partial'" value="" optional="False" argument="'partial'" help=""/>
6243 </when> 6243 </when>
6428 <when value="no_set"> 6428 <when value="no_set">
6429 </when> 6429 </when>
6430 6430
6431 <when value="from_list"> 6431 <when value="from_list">
6432 <param name="condition_MOD_1" type="select" label="Select value"> 6432 <param name="condition_MOD_1" type="select" label="Select value">
6433 <option value="{dominant">{dominant</option> 6433 <option value="{dominant"><![CDATA[{dominant]]></option>
6434 <option value="recessive}">recessive}</option> 6434 <option value="recessive}"><![CDATA[recessive}]]></option>
6435 </param> 6435 </param>
6436 </when> 6436 </when>
6437 </conditional> 6437 </conditional>
6438 <param name="condition_MOD_2_0" type="text" label="'multiallelic'" value="" optional="False" argument="'multiallelic'" help=""/> 6438 <param name="condition_MOD_2_0" type="text" label="'multiallelic'" value="" optional="False" argument="'multiallelic'" help=""/>
6439 </when> 6439 </when>
6457 <when value="no_set"> 6457 <when value="no_set">
6458 </when> 6458 </when>
6459 6459
6460 <when value="from_list"> 6460 <when value="from_list">
6461 <param name="condition_list_MOD_1" type="select" label="Select value"> 6461 <param name="condition_list_MOD_1" type="select" label="Select value">
6462 <option value="{dominant">{dominant</option> 6462 <option value="{dominant"><![CDATA[{dominant]]></option>
6463 <option value="recessive}">recessive}</option> 6463 <option value="recessive}"><![CDATA[recessive}]]></option>
6464 </param> 6464 </param>
6465 </when> 6465 </when>
6466 </conditional> 6466 </conditional>
6467 <param name="condition_list_MOD_2_0" type="text" label="'multiallelic'" value="" optional="False" argument="'multiallelic'" help=""/> 6467 <param name="condition_list_MOD_2_0" type="text" label="'multiallelic'" value="" optional="False" argument="'multiallelic'" help=""/>
6468 </when> 6468 </when>