Mercurial > repos > blankenberg > package_pybamtools

view tool_dependencies.xml @ 5:0b4fb804d717

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Update to latest checkout revision.
author Daniel Blankenberg <dan@bx.psu.edu>
date Thu, 16 May 2013 09:25:40 -0400
parents 1f1c730c03c5
children 0e053330e01c
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<?xml version="1.0"?>
<tool_dependency>
    <package name="pyBamTools" version="0.0.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone -r 4f73c081e2ca07167ff6e9e856d19970190e640c https://bitbucket.org/dan/pybamtools pyBamTools</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR</action> 
                <action type="set_environment">
                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Installs pyBamTools libraries.
        </readme>
    </package>
</tool_dependency>