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planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamparser_0_0_1 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e
author blankenberg
date Thu, 17 Sep 2015 11:07:29 -0400
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children f0447bf3223c
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<?xml version="1.0"?>
<tool_dependency>
    <package name="pyBamParser" version="0.0.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone -r e0d3642d2648336913038393ca6d92dac5efe284 https://bitbucket.org/dan/pybamparser pyBamParser</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR</action> 
                <action type="set_environment">
                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Installs pyBamParser libraries.
        </readme>
    </package>
</tool_dependency>