Mercurial > repos > blankenberg > naive_variant_detector

changeset 8:eeb1103b8bd5

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Update pyBamtools dependency revision.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 23 Aug 2013 17:32:37 -0400
parents 5907f90b7ae1
children a17fbdd7b47a
files dependency_configs/tool_dependencies.xml tools/naive_variant_detector.xml
diffstat 2 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/dependency_configs/tool_dependencies.xml	Tue May 21 16:29:32 2013 -0400
+++ b/dependency_configs/tool_dependencies.xml	Fri Aug 23 17:32:37 2013 -0400
@@ -6,6 +6,6 @@
         <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_pybamparser" owner="blankenberg" changeset_revision="3cbac77af20f" />
     </package>
     <package name="pyBamTools" version="0.0.1">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_pybamtools" owner="blankenberg" changeset_revision="0b4fb804d717" />
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_pybamtools" owner="blankenberg" changeset_revision="0e053330e01c" />
     </package>
 </tool_dependency>
--- a/tools/naive_variant_detector.xml	Tue May 21 16:29:32 2013 -0400
+++ b/tools/naive_variant_detector.xml	Fri Aug 23 17:32:37 2013 -0400
@@ -1,4 +1,4 @@
-<tool id="naive_variant_detector" name="Naive Variant Detector" version="0.0.1">
+<tool id="naive_variant_detector" name="Naive Variant Caller" version="0.0.1">
   <description>on BAM files</description>
   <requirements>
     <requirement type="package" version="1.7.1">numpy</requirement>
@@ -88,7 +88,6 @@
     <param name="min_base_quality" type="integer" value="" label="Minimum base quality" optional="True" />
     <param name="min_mapping_quality" type="integer" value="" label="Minimum mapping quality" optional="True" />
     
-        
     <param name="ploidy" type="integer" value="2" min="1" label="Ploidy" />
     <param name="variants_only" type="boolean" truevalue="--variants_only" falsevalue="" checked="False" label="Only write out positions with with possible alternate alleles"/>