Mercurial > repos > blankenberg > data_manager_fetch_genome_dbkeys_all_fasta

annotate data_manager_conf.xml @ 1:0e5299e77334 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author blankenberg
date Mon, 26 Jan 2015 14:54:16 -0500
parents d59e1d23b388
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
1 <?xml version="1.0"?>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
2 <data_managers>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
3
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
4 <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml" id="fetch_genome_all_fasta_dbkeys">
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
5 <data_table name="all_fasta">
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
6 <output>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
7 <column name="value" />
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
8 <column name="dbkey" />
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
9 <column name="name" />
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
10 <column name="path" output_ref="out_file" >
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
11 <move type="file">
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
12 <source>${path}</source>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
14 </move>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
16 <value_translation type="function">abspath</value_translation>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
17 </column>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
18 </output>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
19 </data_table>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
20 <data_table name="__dbkeys__">
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
21 <output>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
22 <column name="value" />
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
23 <column name="name" />
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
24 <column name="len_path" output_ref="out_file" >
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
25 <move type="file">
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
26 <source>${len_path}</source>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
28 </move>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
30 <value_translation type="function">abspath</value_translation>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
31 </column>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
32 </output>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
33 </data_table>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
34 </data_manager>
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
35
d59e1d23b388 Create data_manager_fetch_genome_dbkeys_all_fasta.
Daniel Blankenberg <dan@bx.psu.edu>
parents:
diff changeset
36 </data_managers>