Mercurial > repos > biopython > package_biopython_1_64
comparison tool_dependencies.xml @ 1:268128adb501 draft
Use the (new) package_numpy_1_8 rather than package_numpy_1_7
| author | biopython |
|---|---|
| date | Mon, 02 Jun 2014 11:18:55 -0400 |
| parents | e031a4f64453 |
| children | e1b9a3f28d3f |
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| 0:e031a4f64453 | 1:268128adb501 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="numpy" version="1.7.1"> | 3 <package name="numpy" version="1.8.1"> |
| 4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="0f9f634dec8a" name="package_numpy_1_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="biopython" version="1.64"> | 6 <package name="biopython" version="1.64"> |
| 7 <readme> | 7 <readme> |
| 8 This Galaxy Tool Shed package installs Biopython from source, having | 8 This Galaxy Tool Shed package installs Biopython from source, having |
| 9 first installed NumPy which is a build time depencency. This requires | 9 first installed NumPy which is a build time depencency. This requires |
| 17 </readme> | 17 </readme> |
| 18 <install version="1.0"> | 18 <install version="1.0"> |
| 19 <actions> | 19 <actions> |
| 20 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.64.tar.gz</action> | 20 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.64.tar.gz</action> |
| 21 <action type="set_environment_for_install"> | 21 <action type="set_environment_for_install"> |
| 22 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 22 <repository changeset_revision="0f9f634dec8a" name="package_numpy_1_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 23 <package name="numpy" version="1.7.1" /> | 23 <package name="numpy" version="1.8.1" /> |
| 24 </repository> | 24 </repository> |
| 25 </action> | 25 </action> |
| 26 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 26 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 27 <action type="shell_command"> | 27 <action type="shell_command"> |
| 28 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 28 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |