Mercurial > repos > biopython > package_biopython_1_61
comparison tool_dependencies.xml @ 1:d2600888fad4 draft
updated to point to the IUC account
| author | bgruening |
|---|---|
| date | Mon, 12 Aug 2013 07:24:09 -0400 |
| parents | 627c7b41b970 |
| children | 54e5c64b0460 |
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| 0:627c7b41b970 | 1:d2600888fad4 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="numpy" version="1.7.1"> | 3 <package name="numpy" version="1.7.1"> |
| 4 <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="793c48909d53" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="matplotlib" version="1.2.1"> | 6 <package name="matplotlib" version="1.2.1"> |
| 7 <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="a476c1177222" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <!-- TODO reportlab -> Python Imaging Library | 9 <!-- TODO reportlab -> Python Imaging Library |
| 10 <package name="reportlab" version="1.2.1"> | 10 <package name="reportlab" version="1.2.1"> |
| 11 <repository name="package_reportlab_1_2" owner="bgruening" prior_installation_required="True" /> | 11 <repository name="package_reportlab_1_2" owner="bgruening" prior_installation_required="True" /> |
| 12 </package> | 12 </package> |
| 14 <package name="biopython" version="1.61"> | 14 <package name="biopython" version="1.61"> |
| 15 <install version="1.0"> | 15 <install version="1.0"> |
| 16 <actions> | 16 <actions> |
| 17 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> | 17 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> |
| 18 <action type="set_environment_for_install"> | 18 <action type="set_environment_for_install"> |
| 19 <repository changeset_revision="c888aa8ed318" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 19 <repository changeset_revision="a476c1177222" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 20 <package name="matplotlib" version="1.2.1" /> | 20 <package name="matplotlib" version="1.2.1" /> |
| 21 </repository> | 21 </repository> |
| 22 <repository changeset_revision="ad6ebe2c75ef" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 22 <repository changeset_revision="793c48909d53" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> |
| 23 <package name="numpy" version="1.7.1" /> | 23 <package name="numpy" version="1.7.1" /> |
| 24 </repository> | 24 </repository> |
| 25 </action> | 25 </action> |
| 26 | 26 |
| 27 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 27 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 28 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 28 <action type="shell_command"> |
| 29 export PATH=$PATH:$PATH_NUMPY && | 29 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 30 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && | 30 export PATH=$PATH:$PATH_NUMPY && |
| 31 python setup.py install --home $INSTALL_DIR</action> | 31 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && |
| 32 python setup.py install --install-lib $INSTALL_DIR/lib/python | |
| 33 </action> | |
| 32 <action type="set_environment"> | 34 <action type="set_environment"> |
| 33 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 35 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
| 34 | 36 |
| 35 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | 37 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> |
| 36 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | 38 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> |