# HG changeset patch
# User biomonika <biomonika@psu.edu>
# Date 1408994117 14400
# Node ID 5bd4a63cba1032f8a3da8f25ca314d55e38b23c9
# Parent  76917da4e1ac645b13611529048738bdf7665fd7
d9

diff -r 76917da4e1ac -r 5bd4a63cba10 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Aug 25 15:12:47 2014 -0400
+++ b/tool_dependencies.xml	Mon Aug 25 15:15:17 2014 -0400
@@ -7,7 +7,7 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action>
-                <action type="shell_command">sed -i .bak -e 's/O2/O2 -fPIC/' Makefile</action>
+                <action type="shell_command">sed -i 's/O2/O2 -fPIC/' Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>