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view test_dependency.xml @ 21:5b01695e449a

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d13
author biomonika <biomonika@psu.edu>
date Mon, 25 Aug 2014 16:51:12 -0400
parents c0eaad1712e0
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<tool id="test_dependency" name="test_dependency">
      <description>Test toolshed dependency</description>
      <requirements>
        <requirement type="set_environment">LINKYX_PATH</requirement>
        <requirement type="set_environment">SAMTOOLS</requirement>
        <requirement type="package" version="0.1.19">samtools</requirement>
      </requirements>
      <command interpreter="bash">test_dependency.sh $output $input1</command>
      <inputs>
        <param format="fastq" name="input1" type="data" label="Reference"/>
      </inputs>
      <outputs>
        <data format="txt" name="output" />
      </outputs>
  
     <tests>
       <test>
        <output name="out_file1" file="Y_results.txt"/>
       </test>
     </tests>
   
     <help>
   Test dependency
     </help>
   
   </tool>