Mercurial > repos > biomonika > test_dependency

comparison tool_dependencies.xml @ 16:76917da4e1ac

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d8
author biomonika <biomonika@psu.edu>
date Mon, 25 Aug 2014 15:12:47 -0400
parents 9c08f9866ce6
children 5bd4a63cba10
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15:9c08f9866ce6 16:76917da4e1ac
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6 <package name="samtools" version="0.1.19"> 6 <package name="samtools" version="0.1.19">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> 9 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action>
10 <action type="shell_command">sed -i .bak -e 's/O2/O2 -fPIC/‘ Makefile</action> 10 <action type="shell_command">sed -i .bak -e 's/O2/O2 -fPIC/' Makefile</action>
11 <action type="shell_command">make</action> 11 <action type="shell_command">make</action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
14 <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable> 14 <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable>
15 </action> 15 </action>