# HG changeset patch
# User biomonika
# Date 1407959596 14400
# Node ID 2d7df29a7ad260930e60ca56b6242e0b235cd262
# Parent  3da5845330858a333df87957035d04146de565f8
Uploaded

diff -r 3da584533085 -r 2d7df29a7ad2 LINKYX_mpileup_wrapper.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LINKYX_mpileup_wrapper.xml	Wed Aug 13 15:53:16 2014 -0400
@@ -0,0 +1,21 @@
+<tool id="LINKYX_mpileup" name="LINKYX_mpileup">
+   2   <description>Run mpileup with LINKYX-specific parameters</description>
+   3   <command interpreter="bash">primer_tester.sh $output $input $input1</command>
+   4   <inputs>
+   5     <param format="bam" name="input" type="data" label="Alignment file"/>
+         <param format="fasta" name="input1" type="data" label="Reference file"/>
+   6   </inputs>
+   7   <outputs>
+   8     <data format="tabular" name="output" />
+   9   </outputs>
+  10 
+  11   <tests>
+  12     <test>
+  15     </test>
+  16   </tests>
+  17 
+  18   <help>
+  19 This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome.
+  20   </help>
+  21 
+  22 </tool>
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