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view scripts/reformat_trinity_header.sh @ 2:c35c3c6a543e

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updated dependencies
author biomonika <biomonika@psu.edu>
date Tue, 02 Sep 2014 15:23:27 -0400
parents 1955f03f092e
children
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#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results