comparison scripts/reformat_trinity_header.sh @ 0:1955f03f092e

initial commit
author biomonika <biomonika@psu.edu>
date Tue, 02 Sep 2014 14:16:04 -0400
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-1:000000000000 0:1955f03f092e
1 #!/bin/bash
2
3 results=$1 #reformatted fasta sequence written here
4 trinity_fasta=${2}
5
6 perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
7 samtools faidx $results
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9