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1 ##fileformat=VCFv4.1
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2 ##samtoolsVersion=0.1.19-44428cd
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3 ##reference=file:///Users/alice/programs/galaxy/galaxy-dist/database/files/000/dataset_340.dat
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4 ##contig=<ID=comp0_c0_seq1,length=1035>
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5 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
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6 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
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7 ##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
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8 ##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
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9 ##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
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10 ##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
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11 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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12 ##INFO=<ID=IS,Number=2,Type=Float,Description="Maximum number of reads supporting an indel and fraction of indel reads">
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13 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
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14 ##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
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15 ##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
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16 ##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
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17 ##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
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18 ##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
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19 ##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
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20 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
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21 ##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
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22 ##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
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23 ##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
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24 ##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
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25 ##INFO=<ID=QBD,Number=1,Type=Float,Description="Quality by Depth: QUAL/#reads">
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26 ##INFO=<ID=RPB,Number=1,Type=Float,Description="Read Position Bias">
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27 ##INFO=<ID=MDV,Number=1,Type=Integer,Description="Maximum number of high-quality nonRef reads in samples">
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28 ##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias (v2) for filtering splice-site artefacts in RNA-seq data. Note: this version may be broken.">
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29 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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30 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
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31 ##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
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32 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
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33 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality non-reference bases">
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34 ##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
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35 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
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36 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT /Users/alice/programs/galaxy/galaxy-dist/database/files/000/dataset_344.dat
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