Mercurial > repos > bgruening > vt_decompose
diff test-data/decompose_result01.vcf @ 0:490e605d1f44 draft default tip
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
| author | bgruening |
|---|---|
| date | Sat, 04 Jun 2016 12:45:04 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/decompose_result01.vcf Sat Jun 04 12:45:04 2016 -0400 @@ -0,0 +1,124 @@ +##fileformat=VCFv4.0 +##FILTER=<ID=PASS,Description="All filters passed"> +##contig=<ID=1,length=249250621,assembly=b37> +##contig=<ID=2,length=243199373,assembly=b37> +##contig=<ID=3,length=198022430,assembly=b37> +##contig=<ID=4,length=191154276,assembly=b37> +##contig=<ID=5,length=180915260,assembly=b37> +##contig=<ID=6,length=171115067,assembly=b37> +##contig=<ID=7,length=159138663,assembly=b37> +##contig=<ID=8,length=146364022,assembly=b37> +##contig=<ID=9,length=141213431,assembly=b37> +##contig=<ID=10,length=135534747,assembly=b37> +##contig=<ID=11,length=135006516,assembly=b37> +##contig=<ID=12,length=133851895,assembly=b37> +##contig=<ID=13,length=115169878,assembly=b37> +##contig=<ID=14,length=107349540,assembly=b37> +##contig=<ID=15,length=102531392,assembly=b37> +##contig=<ID=16,length=90354753,assembly=b37> 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ALT allele, in the same order as listed"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> +##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership"> +##INFO=<ID=refseq.name,Number=1,Type=String,Description="RefSeq name"> +##INFO=<ID=refseq.positionType,Number=1,Type=String,Description="RefSeq genome type position"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##INFO=<ID=OLD_MULTIALLELIC,Number=1,Type=String,Description="Original chr:pos:ref:alt encoding"> +#CHROM POS ID REF ALT QUAL FILTER INFO +20 421808 . A ACCA . PASS VC=INDEL;AC=24;AF=0.08;AN=316;refseq.name=NM_144628;refseq.positionType=intron +20 1292033 . C CTTGT . PASS VC=INDEL;AC=28;AF=0.1;AN=276;refseq.name=NM_080489;refseq.positionType=intron +20 1340527 . T TGTC . PASS VC=INDEL;AC=56;AF=0.18;AN=316 +20 1600125 . GAA G . PASS VC=INDEL;AC=3;AF=0.01;AN=312;refseq.name=NM_001083910;refseq.positionType=intron +20 1728298 . G GT . PASS VC=INDEL;AC=199;AF=0.63;AN=316 +20 2171402 . T TA . PASS VC=INDEL;AC=223;AF=0.71;AN=316 +20 2171404 . A AA . PASS VC=INDEL;AC=223;AF=0.71;AN=316 +20 2982245 . CT C . PASS VC=INDEL;AC=118;AF=0.38;AN=314;refseq.name=NM_002836;refseq.positionType=intron +20 3025866 . TCAAA T . PASS VC=INDEL;AC=31;AF=0.1;AN=306;refseq.name=NM_001501;refseq.positionType=intron +20 3373441 . TCTTT T . PASS VC=INDEL;AC=58;AF=0.18;AN=316;refseq.name=NM_001009984;refseq.positionType=intron +20 3635159 . T TT . PASS VC=INDEL;AC=130;AF=0.47;AN=274 +20 4422119 . GCTCCCAGGCTACAGAAAGATGATGGAG G . PASS VC=INDEL;AC=174;AF=0.55;AN=314 +20 5151108 . GTTCT G . PASS VC=INDEL;AC=61;AF=0.2;AN=304;refseq.name=NM_003818;refseq.positionType=intron +20 5280839 . T TATA . PASS VC=INDEL;AC=202;AF=0.75;AN=268 +20 5291223 . TCAG T . PASS VC=INDEL;AC=51;AF=0.16;AN=316;refseq.name=NM_144773;refseq.positionType=intron +20 5509358 . T TG . PASS VC=INDEL;AC=136;AF=0.43;AN=316 +20 5900669 . G GC . PASS VC=INDEL;AC=69;AF=0.23;AN=300;refseq.name=NM_001819;refseq.positionType=intron +20 5900670 . C CC . PASS VC=INDEL;AC=68;AF=0.22;AN=304;refseq.name=NM_001819;refseq.positionType=intron +20 6351757 . C CTT . PASS VC=INDEL;AC=52;AF=0.17;AN=314 +20 6362163 . GC G . PASS VC=INDEL;AC=49;AF=0.2;AN=250 +20 6481086 . T TTGTC . PASS VC=INDEL;AC=307;AF=0.97;AN=316 +20 8080280 . GTTTG G . PASS VC=INDEL;AC=118;AF=0.37;AN=316 +20 8781394 . AA A . PASS VC=INDEL;AC=122;AF=0.39;AN=316;refseq.name=NM_015192;refseq.positionType=intron +20 8833756 . TT T . PASS VC=INDEL;AC=13;AF=0.04;AN=298;refseq.name=NM_015192;refseq.positionType=intron +20 9035330 . T TT . PASS VC=INDEL;AC=110;AF=0.35;AN=314 +20 9311904 . TGTATCTGTCCA T . PASS VC=INDEL;AC=46;AF=0.15;AN=314;refseq.name=NM_000933;refseq.positionType=intron +20 9389232 . GGGTTTGAT G . PASS VC=INDEL;AC=77;AF=0.25;AN=306;refseq.name=NM_000933;refseq.positionType=intron