Mercurial > repos > bgruening > upload_testing
changeset 109:89dd3b812906 draft
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 12 Apr 2014 07:25:47 -0400 |
| parents | 00a775971820 |
| children | fa6ef7619bbd |
| files | peptide_shaker.xml reverse.py tool_dependencies.xml |
| diffstat | 3 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/peptide_shaker.xml Fri Apr 11 18:14:57 2014 -0400 +++ b/peptide_shaker.xml Sat Apr 12 07:25:47 2014 -0400 @@ -1,8 +1,8 @@ <tool id="peptide_shaker" name="Peptide Shaker" version="0.1.0"> <!-- TODO: Set defaults for weights correctly --> <requirements> - <requirement type="package" version="0.20.1">peptide_shaker</requirement> - <requirement type="package" version="1.14.4">searchgui</requirement> + <requirement type="package" version="0.28.0">peptide_shaker</requirement> + <requirement type="package" version="1.18.0">searchgui</requirement> </requirements> <description> Peform protein identification combining X! Tandem and OMSSA (using SearchGUI) and PeptideShaker pipeline.
--- a/reverse.py Fri Apr 11 18:14:57 2014 -0400 +++ b/reverse.py Sat Apr 12 07:25:47 2014 -0400 @@ -19,9 +19,9 @@ _exec(command) -def _run_dbtoolkit(java_class, args): +def _run_dbtoolkit(java_class, command, args): command_prefix = "java -cp %s" % _dbtoolkit_jar_path( args.script_path ) - _exec("%s %s %s" % (command_prefix, java_class, args)) + _exec("%s %s %s" % (command_prefix, java_class, command)) def _dbtoolkit_jar_path( script_path ):
--- a/tool_dependencies.xml Fri Apr 11 18:14:57 2014 -0400 +++ b/tool_dependencies.xml Sat Apr 12 07:25:47 2014 -0400 @@ -3,10 +3,10 @@ <set_environment version="1.0"> <environment_variable action="set_to" name="PEPTIDESHAKER_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> - <package name="searchgui" version="1.14.4"> - <repository changeset_revision="0692ca995a01" name="package_searchgui_1_14_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="searchgui" version="1.18.0"> + <repository changeset_revision="3bcfc0d7275b" name="package_searchgui_1_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="peptide_shaker" version="0.20.1"> - <repository changeset_revision="c661fad47f03" name="package_peptideshaker_0_20_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="peptide_shaker" version="0.28.0"> + <repository changeset_revision="aa0a836dfaa9" name="package_peptideshaker_0_28" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>