Mercurial > repos > bgruening > upload_testing
changeset 108:00a775971820 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 11 Apr 2014 18:14:57 -0400 |
| parents | da57c348cbb0 |
| children | 89dd3b812906 |
| files | datatypes_conf.xml reverse.py |
| diffstat | 2 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.xml Fri Apr 11 18:14:57 2014 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<datatypes> + <registration> + <datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="true" /> + </registration> +</datatypes>
--- a/reverse.py Fri Apr 11 17:06:03 2014 -0400 +++ b/reverse.py Fri Apr 11 18:14:57 2014 -0400 @@ -9,10 +9,8 @@ def main(): (options, args) = _parse_args() - format_args = (options.input, options.output) - _run_shell("cat '%s' > '%s'" % format_args) - _run_dbtoolkit("com.compomics.dbtoolkit.toolkit.ReverseFASTADB", "'%s' | head --lines -4 >> '%s'" % \ - format_args) + _run_shell("cat '%s' > '%s'" % (options.input, options.output)) + _run_dbtoolkit("com.compomics.dbtoolkit.toolkit.ReverseFASTADB", "'%s' | head --lines -4 >> '%s'" % (options.input, options.output), options) def _run_shell(command):