diff reverse.xml @ 110:fa6ef7619bbd draft default tip

Uploaded

--- a/reverse.xml	Sat Apr 12 07:25:47 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="compomics_reverse" name="Create Target-Decoy Database" version="0.1.0">
-    <description>Creates a target-decoy database for use with Peptide Shaker</description>
-    <requirements>
-        <requirement type="set_environment">PEPTIDESHAKER_SCRIPT_PATH</requirement>
-    </requirements>
-    <command interpreter="python">
-        reverse.py 
-            --input='$input'
-            --output='$output'
-            --script_path \$PEPTIDESHAKER_SCRIPT_PATH
-    </command>
-    <inputs>
-        <param format="fasta" name="input" type="data" label="FASTA Input" />
-    </inputs>
-    <outputs>
-        <data format="fasta" name="output" />
-    </outputs>
-    <help>
-**What it does**
-
-Given an input database, this tool will produce a target-decoy
-database in the format required by PeptideShaker using dbtoolkit.
-
-------
-
-**Citation**
-
-For the underlying tool, please cite `Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5`.
-
-If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/peptideshaker .
-
-    </help>
-</tool>