Mercurial > repos > bgruening > upload_testing

diff MiClip_wrapper.sh @ 101:4235fcb5b090 draft

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Uploaded
author bgruening
date Sun, 02 Mar 2014 11:49:08 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MiClip_wrapper.sh	Sun Mar 02 11:49:08 2014 -0500
@@ -0,0 +1,10 @@
+R --vanilla --slave --args $1 $2 $3 $4 $5 $6 $7 $8 $9 ${10} ${11} < /HOME/galaxy/galaxy-dist/tools/MiClip/MiClip.R > dump
+if [ -f ${__tool_data_path__}clusters.csv ]
+ then
+   zip temp ${__tool_data_path__}log.txt
+   zip temp ${__tool_data_path__}*.csv
+   mv ${__tool_data_path__}temp.zip ${12}
+ else 
+   cat dump >&2
+fi
+