Mercurial > repos > bgruening > upload_testing
diff tool_dependencies.xml @ 104:0b732f3cfad0 draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 03 Apr 2014 06:07:32 -0400 |
| parents | de242914a56a |
| children | f258fbfead4b |
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--- a/tool_dependencies.xml Wed Mar 05 02:24:52 2014 -0500 +++ b/tool_dependencies.xml Thu Apr 03 06:07:32 2014 -0400 @@ -1,49 +1,74 @@ <?xml version="1.0"?> <tool_dependency> - <package name="libxml2" version="2.9.1"> - <repository changeset_revision="cff446402e07" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="iconv" version="1.14"> - <repository changeset_revision="5b87c1521e4d" name="package_iconv_1_14" owner="iracooke" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="openbabel" version="2.3.2"> + <repository changeset_revision="8426be5149ce" name="package_openbabel_2_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="openssl" version="1.0"> - <repository changeset_revision="d3f9ae5d3727" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="graphicsmagick" version="1.3.18"> + <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> - - <package name="ruby" version="2.0"> + <package name="osra" version="2.0.0"> <install version="1.0"> <actions> - <action type="download_by_url">http://cache.ruby-lang.org/pub/ruby/2.0/ruby-2.0.0-p451.tar.gz</action> + <!-- first action is always downloading --> + <action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/2.0.0/osra-2.0.0.tgz</action> + + <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> - <repository changeset_revision="cff446402e07" name="package_libxml2_2_9_1" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="libxml2" version="2.9.1" /> + <repository changeset_revision="8426be5149ce" name="package_openbabel_2_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="openbabel" version="2.3.2" /> </repository> - <repository changeset_revision="5b87c1521e4d" name="package_iconv_1_14" owner="iracooke" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="iconv" version="1.14" /> - </repository> - <repository changeset_revision="d3f9ae5d3727" name="package_openssl_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="openssl" version="1.0" /> + <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="graphicsmagick" version="1.3.18" /> </repository> </action> - <!-- Fails on OSX due to lack of openssl. --> - <action type="autoconf">--disable-install-doc</action> + <!--compiling potrace-1.11 --> + <action type="shell_command">wget http://potrace.sourceforge.net/download/potrace-1.11.tar.gz</action> + <action type="shell_command">tar xfvz potrace-1.11.tar.gz && cd potrace-1.11 && ./configure --with-libpotrace --prefix=$INSTALL_DIR/potrace/build && make && make install</action> + + <!--compiling gocr 0.50patched --> + <!-- not yet possible + <action type="shell_command">wget http://www-e.uni-magdeburg.de/jschulen/ocr/gocr-0.50.tar.gz</action> + <action type="shell_command">tar xfvz gocr-0.50.tar.gz && cd gocr-0.50 && ./configure -|-prefix=$INSTALL_DIR/gocr/build && make libs && make all install</action> + --> + <action type="shell_command">wget http://downloads.sourceforge.net/project/osra/gocr-patched/gocr-0.50pre-patched.tgz</action> + <action type="shell_command">tar xfvz gocr-0.50pre-patched.tgz && cd gocr-0.50pre-patched && ./configure --prefix=$INSTALL_DIR/gocr/build && make libs && make all install</action> + + + <!--compiling tclap 1.2.1 --> + <action type="shell_command">wget http://downloads.sourceforge.net/project/tclap/tclap-1.2.1.tar.gz</action> + <action type="shell_command">tar xfvz tclap-1.2.1.tar.gz && cd tclap-1.2.1 && ./configure --prefix=$INSTALL_DIR/tclap/build && make && make install</action> + + <!--compiling ocrad 0.21 --> + <action type="shell_command">wget http://mirror.checkdomain.de/gnu/ocrad/ocrad-0.21.tar.gz</action> + <action type="shell_command">tar xfvz ocrad-0.21.tar.gz && cd ocrad-0.21 && ./configure --prefix=$INSTALL_DIR/ocrad/build && make && make install</action> + + <!--compiling cuneiform 1.1.0 --> + <action type="shell_command">wget https://launchpad.net/cuneiform-linux/1.1/1.1/+download/cuneiform-linux-1.1.0.tar.bz2</action> + <action type="shell_command">tar xfvj cuneiform-linux-1.1.0.tar.bz2 && cd cuneiform-linux-1.1.0 && mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/cuneiform/build/ && make && make install</action> + + <!--And finally OSRA 1.4.0--> + <!-- Extending the PATH is needed for OSRA --> + <action type="shell_command">export PATH=$PATH:$GRAPHICSMAGICK_ROOT_DIR/bin/ && + ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ --with-openbabel-lib=$OPENBABEL_LIB_DIR --with-graphicsmagick-lib=$GRAPHICSMAGICK_ROOT_DIR/lib/ --with-graphicsmagick-include=$GRAPHICSMAGICK_ROOT_DIR/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + + <action type="shell_command">rm $INSTALL_DIR/tclap/ -r</action> + <!--<action type="shell_command">rm $INSTALL_DIR/openbabel/ -r</action>--> + <action type="shell_command">rm $INSTALL_DIR/gocr/ -r</action> + <action type="shell_command">rm $INSTALL_DIR/ocrad/ -r</action> + <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action> <action type="set_environment"> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[GRAPHICSMAGICK_ROOT_DIR]/lib/</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/potrace/build/lib/</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="set_to" name="RUBYLIB">$INSTALL_DIR/lib/</environment_variable> - <environment_variable action="set_to" name="RUBY_HOME">$INSTALL_DIR</environment_variable> - <environment_variable action="set_to" name="GALAXY_RUBY_HOME">$INSTALL_DIR</environment_variable> - <!--<environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[PYTHONPATH_NUMPY]</environment_variable>--> + <!-- OSRA_DATA_FILES is only used by the galaxy wrapper and is not part of OSRA --> + <environment_variable action="set_to" name="OSRA_DATA_FILES">$INSTALL_DIR/share</environment_variable> </action> </actions> </install> - <readme> - This installs ruby 2.0.x. Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. - It has an elegant syntax that is natural to read and easy to write. - https://www.ruby-lang.org/ - - RUBYHOME and RUBYLIB will be set and with GALAXY_RUBY_HOME you can access the root installation directory. - </readme> + <readme>We still have a handfull of requirements</readme> </package> </tool_dependency>