Mercurial > repos > bgruening > trim_galore

diff test-data/paired_hardtrimmed3_pair2_.fastqsanger @ 16:cc01cbc4e7f7 draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 276a0ec327f5369c16563696047f0d31577c353f"
author bgruening
date Fri, 08 Oct 2021 09:57:12 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_hardtrimmed3_pair2_.fastqsanger	Fri Oct 08 09:57:12 2021 +0000
@@ -0,0 +1,396 @@
+@M01368:8:000000000-A3GHV:1:1101:6911:8255/1
+TCGCACCTACGTTCAATATT
++
+FFEFE;DFFFDFBFF/9BFB
+@M01368:8:000000000-A3GHV:1:1101:14518:9998/1
+GACCTGTGATCCATCGTGAT
++
+FF//;BFFFFFBF/9D:A//
+@M01368:8:000000000-A3GHV:1:1101:18422:19051/1
+TATTATTTATCGCACCTACG
++
+FFEFBFFFFFFFFFF:FFF.
+@M01368:8:000000000-A3GHV:1:1101:25545:21098/1
+TTTAAGGGGAACGGGTGGGG
++
+FBFFFFFFBF..A..;@B--
+@M01368:8:000000000-A3GHV:1:1101:5446:12248/1
+AAGGGGAACGTGTGGGCTAT
++
+FFFBFFFFFFEFFFFFEFFF
+@M01368:8:000000000-A3GHV:1:1101:5861:6452/1
+TGATCCATCGTGATGTCTTT
++
+FFFFFBFFBD.AFFFFFFF0
+@M01368:8:000000000-A3GHV:1:1102:10403:6021/1
+ACCCTATGTCGCAGTATCTG
++
+..9..9/9;BEF;A:9/BFF
+@M01368:8:000000000-A3GHV:1:1102:10677:23253/1
+AATTCTGTCTCTTATACACA
++
+F0FFFFFFFFFFFFFFFFF:
+@M01368:8:000000000-A3GHV:1:1102:13809:1733/1
+GTCTCTTATACACATCTCCG
++
+FBBBFFFFFBFF0BFBF9F.
+@M01368:8:000000000-A3GHV:1:1102:17584:10050/1
+AATCTCGTATGCCGTCTTCT
++
+FF;.BF9ADF/9;A;DFFF0
+@M01368:8:000000000-A3GHV:1:1102:18842:24844/1
+TCTGTCTTTGATTCCTGCCT
++
+BBBFBFBFFF//BFB/BFF/
+@M01368:8:000000000-A3GHV:1:1102:21788:11027/1
+ACTAAAGTGTGTTAATTCTG
++
+FBFF0FFBBBBFBFBFFFF0
+@M01368:8:000000000-A3GHV:1:1102:5728:8777/1
+CCTGAAGTAGGAACCAGATG
++
+FFFFBBFFFFF/FFEFFFBB
+@M01368:8:000000000-A3GHV:1:1102:5983:21093/1
+TATTATTTATCGCACCTACG
++
+F0BFFFBBFF0EFFFFFFFA
+@M01368:8:000000000-A3GHV:1:1102:7765:18353/1
+CCTATGTCGCAGTATCTGTC
++
+.::FBFBFFE-A9:BFFFF0
+@M01368:8:000000000-A3GHV:1:1103:10405:17879/1
+TATTATTTATCGCACCTACG
++
+FBFFFFFFFFFFFFFFFFF?
+@M01368:8:000000000-A3GHV:1:1103:13493:8205/1
+GATTCCTGCCTCATCCTATT
++
+FFFFFFFFBFBBBFFFFEFF
+@M01368:8:000000000-A3GHV:1:1103:14060:21273/1
+TATTACTGTCTCTTATACAC
++
+:FFFBB/BFFFFFBFFFFB/
+@M01368:8:000000000-A3GHV:1:1103:14528:12993/1
+TCGCAGTATCTGTCTTTGAT
++
+BFEA-A.B//9F9F//;BBB
+@M01368:8:000000000-A3GHV:1:1103:17657:20856/1
+TGCCTCATCCTATTATTTAT
++
+FFFFFFFFFFF/FFFFBFF9
+@M01368:8:000000000-A3GHV:1:1103:23099:3794/1
+GCGAATCTCGGATGCCGTCT
++
+FFFF@;.9BF..;-./-A=F
+@M01368:8:000000000-A3GHV:1:1103:25465:20010/1
+AAAAAAAAAAAACAACAGAC
++
+.B/;:>---;--..;.../9
+@M01368:8:000000000-A3GHV:1:1103:25519:6301/1
+GAGACTAAGGCGAATTTCGT
++
+-B?DFFF/B/B?---.//;.
+@M01368:8:000000000-A3GHV:1:1103:6074:6549/1
+GTATCTGTCTTTGATTCCTG
++
+A./FFFFFFFFFFFF/BFF/
+@M01368:8:000000000-A3GHV:1:1104:11572:8264/1
+TATTATTTATCGCACCTACG
++
+B/BFFFF/BFFE?EFAFEF9
+@M01368:8:000000000-A3GHV:1:1104:11928:24197/1
+TAGGAACCAGATGTCGGATA
++
+FFFFFFFFFFFFFFFFF@D9
+@M01368:8:000000000-A3GHV:1:1104:12288:20635/1
+TCTGTCTTTGATTCCTGCCT
++
+;FBBFBFB///;99999BA9
+@M01368:8:000000000-A3GHV:1:1104:13832:4398/1
+ACCCAGTAGACTAGTGCGTC
++
+9...:.9//9////;/9-.-
+@M01368:8:000000000-A3GHV:1:1104:23670:4161/1
+GGGTGATAGACCTGTGATCC
++
+BF./AAF/BFFBBF/F/BFB
+@M01368:8:000000000-A3GHV:1:1104:24927:22253/1
+TTCCTGCCTCATCCTATTAT
++
+//;/;9/A/;/9BFFFBFBB
+@M01368:8:000000000-A3GHV:1:1104:4705:7727/1
+CGTGATGTCTTATTTAAGGG
++
+F?.AFFF/BFFEFFFFFEFF
+@M01368:8:000000000-A3GHV:1:1104:7756:4776/1
+GTCGCAGTATCTGTCTTTGA
++
+FFBEFFF:9FFFFBBFFFF/
+@M01368:8:000000000-A3GHV:1:1105:11310:21761/1
+TGTCGGATACAGTTCACTTT
++
+FFBFFFFFFFFFFFFEFFF0
+@M01368:8:000000000-A3GHV:1:1105:11578:14676/1
+TGAAGTAGGAACCAGATGTC
++
+FF/FFFFFFFFFFFFFFFF0
+@M01368:8:000000000-A3GHV:1:1105:13575:19255/1
+TGGGCTATTTAGGTTTTATG
++
+FF?B---;B99//9/;A//9
+@M01368:8:000000000-A3GHV:1:1105:15502:11453/1
+CTGTCTCTTATACACATCTC
++
+FFFFEFFFFFFFFBFFFBFF
+@M01368:8:000000000-A3GHV:1:1105:16787:9771/1
+GACCTGTGATCCATCGTGAT
++
+FFFFFFBFFFFFFFFFEFF/
+@M01368:8:000000000-A3GHV:1:1105:17564:15723/1
+TTAGGTTTTATGACCCTGAA
++
+FFBBFBBFFFFFE1:BFFB0
+@M01368:8:000000000-A3GHV:1:1105:18108:12091/1
+GATACCTGTCTCTTATACAC
++
+F-A.B//;BFFEF//BB///
+@M01368:8:000000000-A3GHV:1:1105:18331:16683/1
+CGCACCTACGTTCAATATTA
++
+B.DABFFFFFFB.//:FB//
+@M01368:8:000000000-A3GHV:1:1105:20577:18421/1
+CTTTGATTCCTGCCTCATCC
++
+FBB/:FF9BF/BF.BBFF/:
+@M01368:8:000000000-A3GHV:1:1105:21099:2895/1
+ATTCCTGCCTCATCCTATTT
++
+BFBFFBFF.0:000BFFBF0
+@M01368:8:000000000-A3GHV:1:1105:26469:19245/1
+ACCTGTGATCCATCGTGATG
++
+FFFFFFF/9FFFFBDEFFFF
+@M01368:8:000000000-A3GHV:1:1105:7169:17145/1
+GAACATACTTACTAAAGTGT
++
+-9@DDBFFFFFFFFBBFFF0
+@M01368:8:000000000-A3GHV:1:1106:15481:16176/1
+TGTGGGCTATTTAGGTTTTT
++
+FE:AAFEF.BFFFFF;9FF.
+@M01368:8:000000000-A3GHV:1:1106:17389:18671/1
+GCAGTATCTGGCTTTGATTC
++
+..;A;/B/;B//;;//BBF/
+@M01368:8:000000000-A3GHV:1:1106:22927:3863/1
+CTCCGAGCCCACGAGACTAA
++
+//FFF-=--.99=--.9///
+@M01368:8:000000000-A3GHV:1:1106:23625:4236/1
+ATTCCTGCCTCATCCTATTA
++
+EFFFFFFFAF///9FF/BB/
+@M01368:8:000000000-A3GHV:1:1106:26031:14826/1
+GTATGCCGTCTTCTGCTTGA
++
+AFFFFFF;;BFE/BFFFFB:
+@M01368:8:000000000-A3GHV:1:1106:27607:15990/1
+AACTACAACCCACGGACGCA
++
+;B.//////;...---9---
+@M01368:8:000000000-A3GHV:1:1106:6455:17124/1
+TATTATTTATCGCACCTACG
++
+F/FFBFFFFFFADE>BFFF9
+@M01368:8:000000000-A3GHV:1:1107:14451:26748/1
+TTTAGGTTTTATGACCCTGA
++
+FBFFFF;FFEBFBFFB./9.
+@M01368:8:000000000-A3GHV:1:1107:18714:24788/1
+TTTAGGTTTTATGACCCTGA
++
+FFFFFFBFFFFFBBFFBBF/
+@M01368:8:000000000-A3GHV:1:1107:21355:8333/1
+CCTGAAGTAGGAACCAGATG
++
+FFFFFFFFFFFFBFF.AA/9
+@M01368:8:000000000-A3GHV:1:1107:22864:15712/1
+ACTAAGGCGAATCTCGTATG
++
+9DFFF/FFBF;-.:;.9A//
+@M01368:8:000000000-A3GHV:1:1107:24817:14233/1
+TCAATATTACAGGCGAACAT
++
+FFFFFBF//:BFBACF--9/
+@M01368:8:000000000-A3GHV:1:1107:24830:14440/1
+ATCCTATTATTTATCGCACC
++
+FFFFFFFFFFF/BFBEFFC-
+@M01368:8:000000000-A3GHV:1:1107:26478:23602/1
+CTGTCTCTTATACACCTCTC
++
+BFFFBBFFF//B/////-;9
+@M01368:8:000000000-A3GHV:1:1108:11059:23181/1
+GACCTGTGATCCATCGTGAT
++
+FFFFBF;BBFFBFFFFE?F/
+@M01368:8:000000000-A3GHV:1:1108:12233:13498/1
+GAACCCTGTCTCTTATACAC
++
+EFF?EFFFF0BFFFFBBB00
+@M01368:8:000000000-A3GHV:1:1108:14328:14751/1
+GGATACCTGTCTCTTATACA
++
+EFFFBF/BF/FFEFFBFFF/
+@M01368:8:000000000-A3GHV:1:1108:16350:22621/1
+TGGGCTATTTAGGTTTTATG
++
+BE.99FAFFFFFFF/;EFF/
+@M01368:8:000000000-A3GHV:1:1108:21791:23272/1
+TGTGGGCTATTTAGGTTTTA
++
+EEFEFFFBFBFBBFFFFF./
+@M01368:8:000000000-A3GHV:1:1108:23314:26089/1
+TGAAGTAGGAACCAGATGTG
++
+BB./:BFFF/F;AA?F////
+@M01368:8:000000000-A3GHV:1:1108:25084:18127/1
+TGTGATCCATCGTGATGTCT
++
+FF9FBFFB/F/.;FFFF/BB
+@M01368:8:000000000-A3GHV:1:1108:7626:10048/1
+TATGCCGTCTTCTGCTTGAA
++
+AAFFFFFFAFABBFFFB/;;
+@M01368:8:000000000-A3GHV:1:1109:11270:12255/1
+AGACTAAGGCGAATCTCGTT
++
+-@DBFFFFBFD---.;BAA.
+@M01368:8:000000000-A3GHV:1:1109:19224:11655/1
+CTTATACACATCTCCGAGCC
++
+FFB/;F/99/FBFFBDCF;B
+@M01368:8:000000000-A3GHV:1:1109:21978:9490/1
+GGCGAATCTCGTATGCAGTT
++
+FFFFA;;;FF..9//;/;;/
+@M01368:8:000000000-A3GHV:1:1109:22910:4079/1
+GATACAGTCCACTTTAGCTA
++
+CCDFFFFFFF0BFFFFFFF0
+@M01368:8:000000000-A3GHV:1:1109:24217:19077/1
+TGCCTCATCCTATTACTGTC
++
+9;F./B//BBFB9////99/
+@M01368:8:000000000-A3GHV:1:1109:25237:11722/1
+AGGCGAATATCGTATGCCGT
++
+BF/99D-;.//.../9;B-.
+@M01368:8:000000000-A3GHV:1:1109:27103:7153/1
+GACCCTGAAGTAGCTGTCTC
++
+BBFFBFFFF///;/9B;///
+@M01368:8:000000000-A3GHV:1:1109:8763:7859/1
+GGGCTATTTAGGCTTTATGC
++
+EDAA.A/BFFFFFFFFFEB/
+@M01368:8:000000000-A3GHV:1:1110:12808:18367/1
+AAGGGGAACGTGTGGGCCTG
++
+BFBFFB9..AF?FFFFFFF9
+@M01368:8:000000000-A3GHV:1:1110:14751:26540/1
+GTATCTGTCTTTGATTCCTG
++
+9-/;B9BF/9BB//B/;///
+@M01368:8:000000000-A3GHV:1:1110:15519:10008/1
+ATGACCCTGAAGTAGGAACC
++
+FFFFFBFFF.BFFFBFBBA;
+@M01368:8:000000000-A3GHV:1:1110:16559:7507/1
+AGGGTGATAGACCTGTGATC
++
+/99;;:.//:FFFFBBF//9
+@M01368:8:000000000-A3GHV:1:1110:16700:6843/1
+CTTATACACATCTCCGAGCC
++
+BFFFFB/BFFBFFF/ADCAD
+@M01368:8:000000000-A3GHV:1:1110:18014:7856/1
+TGCTTGCAAAAAAAAAATAG
++
+/BBFFF.9/FF?DA=@9./9
+@M01368:8:000000000-A3GHV:1:1110:23303:11846/1
+CTGTCTTTGATTCCTGCCTC
++
+FBBFFFF/BBFFFFBFF9B;
+@M01368:8:000000000-A3GHV:1:1111:13195:14562/1
+ACATCTCCGAGCCCACGAGA
++
+FFEFFFFED-DCFF?.:BFA
+@M01368:8:000000000-A3GHV:1:1111:14287:20817/1
+ATTAAAGTGTGTTAATTAAT
++
+B//B/;/;9//9//;B/:B9
+@M01368:8:000000000-A3GHV:1:1111:23624:14516/1
+CATCGTGATGTCTTATTTAG
++
+B/FBDE9/;99/B/BFFEF/
+@M01368:8:000000000-A3GHV:1:1111:7437:24508/1
+CACATCTCCGAGCCCACGAG
++
+FFFFB:FFFFD=CAEEEF>-
+@M01368:8:000000000-A3GHV:1:1111:8665:25542/1
+TACGTTCAATATTACAGGCG
++
+FFFBA/F//BFFFBF/;/A-
+@M01368:8:000000000-A3GHV:1:1111:9655:13916/1
+GTCGCAGTATCTGTCTTTGA
++
+F/B?A@F-9BBFF//BB/9/
+@M01368:8:000000000-A3GHV:1:1112:10272:7828/1
+CGAATCTCGTATGCCGTCTT
++
+FAD--.99;A?////:.9A.
+@M01368:8:000000000-A3GHV:1:1112:9832:16531/1
+ATGACCTTGAAGTAGGAACC
++
+FFF/BF//9/B//9:B//..
+@M01368:8:000000000-A3GHV:1:1112:9832:6701/1
+TTTATGACCCTGAAGTAGGA
++
+FFFFFFF/B./FB///;BF/
+@M01368:8:000000000-A3GHV:1:1113:13532:8618/1
+AGCTACCTCCAAGTGTTATG
++
+FF/BFFB/:.BB//;FBFFF
+@M01368:8:000000000-A3GHV:1:1113:21679:18011/1
+AGACTAAGGCGAAGTTCATT
++
+;-;AFFE;/99-9--/;///
+@M01368:8:000000000-A3GHV:1:1113:25528:14016/1
+TCGTGATGTCTTATTTAAGG
++
+FFFEABF//99FFEFFFBFF
+@M01368:8:000000000-A3GHV:1:1113:5741:16959/1
+GGGCTATTTAGGTTTTATGA
++
+9AD;.FFFB/B/;FBA/B//
+@M01368:8:000000000-A3GHV:1:1114:10130:11959/1
+GCAACAAACACACATCCAGA
++
+F./B/..9.9:...//////
+@M01368:8:000000000-A3GHV:1:1114:14540:5315/1
+TGGGGGCTATTTAGGTTTTT
++
+;A.-=A--:BBFB90;;FE.
+@M01368:8:000000000-A3GHV:1:1114:15066:16302/1
+TAATTATTGCTTGTAGGACA
++
+F/;BFF/;/////9/////.
+@M01368:8:000000000-A3GHV:1:1114:16639:15258/1
+ACATACTTACTAAATTGTGT
++
+-9-99/B9F/://///99/;
+@M01368:8:000000000-A3GHV:1:1114:2404:13066/1
+ATCTGTCTATTATACACATC
++
+FFFFFFFFFFFFFFFFEFF0