# HG changeset patch # User bgruening # Date 1464872319 14400 # Node ID 062ed2bb4f2e134beec704ae7276b3e014e92eba # Parent e6d48dc4e6bab2e33b7590e6b0b421d4ae8bce1a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f8896018f5b980a456c4ceaffe0ed457dc80b5a8 diff -r e6d48dc4e6ba -r 062ed2bb4f2e awk.xml --- a/awk.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/awk.xml Thu Jun 02 08:58:39 2016 -0400 @@ -4,7 +4,7 @@ macros.xml - gnu_awk + gawk awk --version | head -n 1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e grep.xml --- a/grep.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/grep.xml Thu Jun 02 08:58:39 2016 -0400 @@ -4,7 +4,7 @@ macros.xml - gnu_grep + grep grep --version | head -n 1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e macros.xml --- a/macros.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/macros.xml Thu Jun 02 08:58:39 2016 -0400 @@ -1,11 +1,11 @@ - gnu_coreutils + coreutils - 1.0 + 1.1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e multijoin --- a/multijoin Fri Mar 18 15:18:21 2016 -0400 +++ b/multijoin Thu Jun 02 08:58:39 2016 -0400 @@ -5,7 +5,6 @@ use Data::Dumper; use Carp; use File::Basename; -use Sort::Key::Natural qw(natsort); my $version = "0.1.1"; my $field_sep = "\t"; @@ -68,7 +67,7 @@ sub print_combined_data() { - my @keys = natsort keys %data ; + my @keys = sort keys %data ; foreach my $key ( @keys ) { my @outputs; diff -r e6d48dc4e6ba -r 062ed2bb4f2e multijoin.xml --- a/multijoin.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/multijoin.xml Thu Jun 02 08:58:39 2016 -0400 @@ -54,7 +54,7 @@ - + diff -r e6d48dc4e6ba -r 062ed2bb4f2e replace_text_in_column.xml --- a/replace_text_in_column.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/replace_text_in_column.xml Thu Jun 02 08:58:39 2016 -0400 @@ -4,7 +4,7 @@ macros.xml - gnu_awk + gawk awk --version | head -n 1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e replace_text_in_line.xml --- a/replace_text_in_line.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/replace_text_in_line.xml Thu Jun 02 08:58:39 2016 -0400 @@ -4,7 +4,7 @@ macros.xml - gnu_sed + sed sed --version | head -n 1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e sed.xml --- a/sed.xml Fri Mar 18 15:18:21 2016 -0400 +++ b/sed.xml Thu Jun 02 08:58:39 2016 -0400 @@ -4,7 +4,7 @@ macros.xml - gnu_sed + sed sed --version | head -n 1 diff -r e6d48dc4e6ba -r 062ed2bb4f2e test-data/grep_results2.html --- a/test-data/grep_results2.html Fri Mar 18 15:18:21 2016 -0400 +++ b/test-data/grep_results2.html Thu Jun 02 08:58:39 2016 -0400 @@ -290,17 +290,11 @@ 
 GCTATAGAAATGTTAACATCGAATGTACATTATAAC
---
 CAGCTAACAATCAAGCGTTACAGATTAGCCCCCCCC
---
 GAACTTGCGTAACGTACAAAAATGCAAGCAAAAAGT
---
 GCTCTGTTAATCTAGAAAATGTGTCTCCCCCCCCCC
---
 AATCGTATAGCTCGGGCCGGATACTAGTACACCCCC
---
 GATATAGTGGATAACTAATGCTCCCCCAGAACTGTT
---
 GAACGGACTATAGCCGGTATCCAAACATAAATGTTC
diff -r e6d48dc4e6ba -r 062ed2bb4f2e text_processing.tar.bz2 Binary file text_processing.tar.bz2 has changed diff -r e6d48dc4e6ba -r 062ed2bb4f2e tool_dependencies.xml --- a/tool_dependencies.xml Fri Mar 18 15:18:21 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,34 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - https://cpan.metacpan.org/authors/id/S/SA/SALVA/Sort-Key-1.33.tar.gz - - - - - Needed perl packages. - - -