diff sorted_uniq.xml @ 0:ec66f9d90ef0 draft

initial uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sorted_uniq.xml	Thu Sep 05 04:58:21 2013 -0400
@@ -0,0 +1,55 @@
+<tool id="unixtools_uniq_tool" name="Unique lines">
+    <description>from sorted file</description>
+    <requirements>
+        <requirement type="package" version="8.21">gnu_coreutils</requirement>
+    </requirements>
+    <command>
+        uniq 
+            -f 
+            $skipfields 
+            $count 
+            $repeated 
+            $ignorecase 
+            $uniqueonly 
+            $input 
+            
+            ## feature is not yet released, it will be in the next 8.22 version
+            ##--group=$group
+            &gt; $output
+    </command>
+
+    <inputs>
+        <param format="txt" name="input" type="data" label="File to scan for unique values" help="Make sure you have sorted this file" />
+
+        <param name="count" type="boolean" label="count [-c]" help="Prefix lines by the number of occurrences" truevalue="-c" falsevalue="" />
+        <param name="repeated" type="boolean" label="repeated [-d]" help="Only print duplicate lines" truevalue="-d" falsevalue="" />
+        <param name="ignorecase" type="boolean" label="ignore case [-i]" help="Ignore differences in case when comparing" truevalue="-i" falsevalue="" />
+        <param name="uniqueonly" type="boolean" label="unique only [-u]" help="Only print unique lines" truevalue="-u" falsevalue="" />
+        <param name="skipfields" type="integer" label="skip fields [-f]" help="Avoid comparing the first N fields. (use zero to start from the first field)" size="2" value="0" />
+
+        <!--
+        <param name="group" type="select" label="Output all lines, and delimit each unique group.">
+            <option value="separate">Separate unique groups with a single delimiter</option>
+            <option value="prepend">Output a delimiter before each group of unique items</option>
+            <option value="append">Output a delimiter after each group of unique items.</option>
+            <option value="both">Output a delimiter around each group of unique items.</option>
+        </param>
+        -->
+    </inputs>
+
+    <outputs>
+        <data format="input" name="output" metadata_source="input"/>
+    </outputs>
+    <help>
+This tool takes a sorted file and look for lines that are unique.
+
+.. class:: warningmark
+
+Please make sure your file is sorted, or else this tool will give you an erroneous output.
+
+.. class:: infomark
+
+You can sort your file using either the "Sort" tool in "Filter and Sort", or the "Sort" tool in "Unix Tools".
+
+    </help>
+</tool>