diff grep.xml @ 6:8928e6d1e7ba draft

Uploaded

--- a/grep.xml	Wed Jan 07 11:15:41 2015 -0500
+++ b/grep.xml	Thu Jan 08 09:07:31 2015 -0500
@@ -66,7 +66,7 @@
 
     </inputs>
     <outputs>
-        <data format="input" name="output" metadata_source="infile">
+        <data name="output" format_source="infile" metadata_source="infile">
             <change_format>
                 <when input="color" value="COLOR" format="html"/>
             </change_format>
@@ -75,26 +75,26 @@
     <tests>
         <test>
             <!-- grep a FASTA file for sequences with specific motif -->
-            <param name="infile" value="unix_grep_input1.txt" />
+            <param name="infile" value="grep1.txt" />
             <param name="case_sensitive" value="case sensitive" />
             <param name="invert" value="" />
             <param name="url_paste" value="AA.{2}GT" />
             <param name="lines_before" value="1" />
             <param name="lines_after" value="0" />
             <param name="color" value="NOCOLOR" />
-            <output name="output" file="unix_grep_output1.txt" />
+            <output name="output" file="grep_results1.txt" />
         </test>
         <test>
             <!-- grep a FASTA file for sequences with specific motif -
              show highlighed output -->
-            <param name="infile" value="unix_grep_input1.txt" />
+            <param name="infile" value="grep1.txt" />
             <param name="case_sensitive" value="case sensitive" />
             <param name="invert" value="" />
             <param name="url_paste" value="AA.{2}GT" />
             <param name="lines_before" value="0" />
             <param name="lines_after" value="0" />
             <param name="color" value="COLOR" />
-            <output name="output" file="unix_grep_output2.html" />
+            <output name="output" file="grep_results2.html" />
         </test>
     </tests>
     <help>