comparison unsorted_uniq.xml @ 26:f22a309187a3 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7

25:cd83b5644eab

<tool id="tp_sorted_uniq" name="Unique" version="@BASE_VERSION@.0">
  <description>occurrences of each record</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <version_command>sort --version | head -n 1</version_command>
    <command>
<![CDATA[
    sort -u

        $is_numeric
        -t '	'
        #if $adv_opts.adv_opts_selector == "advanced":
            -k$adv_opts.column_start,$adv_opts.column_end
        #end if
        -o "$outfile"
        "$infile"
]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="tabular" label="File to scan for unique values" />
        <param name="ignore_case" type="boolean" truevalue="-f" falsevalue="" checked="False"

       chr1  105  200  gene2
       chr2   10  100  gene4
       chr2 1000 1900  gene5
       chr3   15 1656  gene6

@REFERENCES@
]]>
</help>
<expand macro="citations" />
</tool>

26:f22a309187a3

<tool id="tp_sorted_uniq" name="Unique" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
  <description>occurrences of each record</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <expand macro="requirements" />
    <version_command>sort --version | head -n 1</version_command>
    <command>
<![CDATA[
    sort -u

        $is_numeric
        -t '	'
        #if $adv_opts.adv_opts_selector == "advanced":
            -k$adv_opts.column_start,$adv_opts.column_end
        #end if
        -o '$outfile'
        '$infile'
]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="tabular" label="File to scan for unique values" />
        <param name="ignore_case" type="boolean" truevalue="-f" falsevalue="" checked="False"

       chr1  105  200  gene2
       chr2   10  100  gene4
       chr2 1000 1900  gene5
       chr3   15 1656  gene6

]]>
</help>
<expand macro="citations" />
</tool>