comparison tail.xml @ 1:a4ad586d1403 draft

Uploaded
author bgruening
date Thu, 05 Sep 2013 11:42:27 -0400
parents ec66f9d90ef0
children 7068d1548234
comparison
equal deleted inserted replaced
0:ec66f9d90ef0 1:a4ad586d1403
2 <description>lines from a dataset (tail)</description> 2 <description>lines from a dataset (tail)</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="8.21">gnu_coreutils</requirement> 4 <requirement type="package" version="8.21">gnu_coreutils</requirement>
5 </requirements> 5 </requirements>
6 <command> 6 <command>
7 tail --lines $count '$input1' &gt; '$output' 7 tail --lines $count '$input' &gt; '$output'
8 </command> 8 </command>
9 9
10 <inputs> 10 <inputs>
11 <param format="txt" name="input1" type="data" label="file to cut" /> 11 <param format="txt" name="input" type="data" label="file to cut" />
12 <param name="count" type="integer" size="5" value="10" label="Output last X lines" help="" /> 12 <param name="count" type="integer" size="5" value="10" label="Output last X lines" help="" />
13 </inputs> 13 </inputs>
14 14
15 <outputs> 15 <outputs>
16 <data format="input" name="output" metadata_source="input1"/> 16 <data format="input" name="output" metadata_source="input"/>
17 </outputs> 17 </outputs>
18 <tests>
19 <test>
20 <param name="count" value="10"/>
21 <param name="infile" value="1.bed"/>
22 <output name="out_file1" file="eq-showtail.dat"/>
23 </test>
24 </tests>
18 <help> 25 <help>
19 26
20 **What it does** 27 **What it does**
21 28
22 This tool runs the **tail** unix command, which discards lines from the beginning of a file. 29 This tool outputs specified number of lines from the **end** of a dataset
30
31 -----
32
33 **Example**
34
35 - Input File::
36
37 chr7 57134 57154 D17003_CTCF_R7 356 -
38 chr7 57247 57267 D17003_CTCF_R4 207 +
39 chr7 57314 57334 D17003_CTCF_R5 269 +
40 chr7 57341 57361 D17003_CTCF_R7 375 +
41 chr7 57457 57477 D17003_CTCF_R3 188 +
42
43 - Show last two lines of above file. The result is::
44
45 chr7 57341 57361 D17003_CTCF_R7 375 +
46 chr7 57457 57477 D17003_CTCF_R3 188 +
23 47
24 </help> 48 </help>
25 </tool> 49 </tool>