comparison replace_text_in_line.xml @ 16:61b3b01662fd draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5d3a6a822897569f22f288589543562f54482418

15:74aae7d6cb09

<tool id="tp_replace_in_line" name="Replace Text" version="@BASE_VERSION@.0">
    <description>in entire line</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="4.2.3.dev0">sed</requirement>
    </requirements>
    <version_command>sed --version | head -n 1</version_command>
    <command>
<![CDATA[
        sed
            -r
            --sandbox
            "s/$find_pattern/$replace_pattern/g"
            "$infile"
        > "$outfile"
]]>
    </command>
    <inputs>
        <param format="txt" name="infile" type="data" label="File to process" />
         <param name="find_pattern" type="text" label="Find pattern" help="Use simple text, or a valid regular expression (without backslashes // ) " >

16:61b3b01662fd

<?xml version="1.0" encoding="UTF-8"?>
<tool id="tp_replace_in_line" name="Replace Text" version="@BASE_VERSION@.0">
    <description>in entire line</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="4.2.3.dev0">sed</requirement>
    </requirements>
    <version_command>sed --version | head -n 1</version_command>
    <command>
    <!--
         This looks quite strange but it is intentional. We have used U+0090 as
         the replacement brackets in the sed expression. This meets multiple requirements for use:

         - is legal entity in XML 1.0 (https://en.wikipedia.org/wiki/Valid_characters_in_XML)
         - is legal as a sed delimiter character (must be single-byte)
         - is not in string.printable

         Thus, this should execute properly. Additionally it allows users to
         use characters like '/' and '\' and '|' in their regex without them
         being able to prematurely terminate the expression.
     -->
<![CDATA[
        sed
            -r
            --sandbox
            's$find_pattern$replace_patterng'
            '$infile'
        > '$outfile'
]]>
    </command>
    <inputs>
        <param format="txt" name="infile" type="data" label="File to process" />
         <param name="find_pattern" type="text" label="Find pattern" help="Use simple text, or a valid regular expression (without backslashes // ) " >