Mercurial > repos > bgruening > text_processing
comparison cat.xml @ 24:5fef6d08de83 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
| author | bgruening |
|---|---|
| date | Tue, 22 Jun 2021 16:03:26 +0000 |
| parents | 7725ab6dab67 |
| children | f22a309187a3 |
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| 23:28b4fd1b0e9a | 24:5fef6d08de83 |
|---|---|
| 1 <tool id="tp_cat" name="Concatenate datasets" version="0.1.0"> | 1 <tool id="tp_cat" name="Concatenate datasets" version="0.1.1"> |
| 2 <description>tail-to-head (cat)</description> | 2 <description>tail-to-head (cat)</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 9 cat --version | head -n 1 | 9 cat --version | head -n 1 |
| 10 ]]> | 10 ]]> |
| 11 </version_command> | 11 </version_command> |
| 12 <command> | 12 <command> |
| 13 <![CDATA[ | 13 <![CDATA[ |
| 14 cat | 14 #for $file in $inputs: |
| 15 #echo ' '.join(['"%s"' % $file for $file in $inputs])# | 15 cat '$file' >> '$out_file1' && |
| 16 #end for | |
| 16 #for $q in $queries: | 17 #for $q in $queries: |
| 17 #echo ' '.join(['"%s"' % $file for $file in $q.inputs2])# | 18 #for $file in $q.inputs2: |
| 19 cat '$file' >> '$out_file1' && | |
| 20 #end for | |
| 18 #end for | 21 #end for |
| 19 > $out_file1 | 22 exit 0 |
| 20 ]]></command> | 23 ]]></command> |
| 21 <inputs> | 24 <inputs> |
| 22 <param name="inputs" multiple="true" type="data" format="txt" label="Datasets to concatenate"/> | 25 <param name="inputs" multiple="true" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" label="Datasets to concatenate"/> |
| 23 <repeat name="queries" title="Dataset"> | 26 <repeat name="queries" title="Dataset"> |
| 24 <param name="inputs2" type="data" format="txt" multiple="True" label="Select" /> | 27 <param name="inputs2" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" multiple="True" label="Select" /> |
| 25 </repeat> | 28 </repeat> |
| 26 </inputs> | 29 </inputs> |
| 27 <outputs> | 30 <outputs> |
| 28 <data name="out_file1" format_source="inputs" metadata_source="inputs"/> | 31 <data name="out_file1" format_source="inputs" metadata_source="inputs"/> |
| 29 </outputs> | 32 </outputs> |