comparison sed.xml @ 4:56e80527c482 draft

Uploaded

3:7068d1548234

<tool id="tp_sed_tool" name="Text transformation" version="0.1.1">
  <description>with sed</description>
    <requirements>
        <requirement type="package" version="4.2.2-sandbox">gnu_sed</requirement>
    </requirements>
    <command>
        sed --sandbox -r 
        
        #if $adv_opts.adv_opts_selector == 'advanced':
            $adv_opts.silent
        #end if
        -f '$sed_script' '$input' &gt; '$output'
    </command>
    <inputs>
        <param format="txt" name="input" type="data" label="File to process" />

        <param name="url_paste" type="text" area="true" size="5x35" label="SED Program" help="">
            <sanitizer>
                <valid initial="string.printable">
                    <remove value="&apos;"/>
                </valid>
            </sanitizer>
        </param>

        <conditional name="adv_opts">
            <param name="adv_opts_selector" type="select" label="Advanced Options">
              <option value="basic" selected="True">Hide Advanced Options</option>
              <option value="advanced">Show Advanced Options</option>
            </param>

                    <option value="">normal</option>
                    <option value="-n">silent</option>
                </param>
            </when>
        </conditional>

  </inputs>
    <configfiles>
      <configfile name="sed_script">
          $url_paste
      </configfile>
  </configfiles>
  <tests>
      <test>
          <param name="input" value="unix_sed_input1.txt" />
          <output name="output" file="unix_sed_output1.txt" />
          <param name="url_paste"  value="1d ; s/foo/bar/" />
          <param name="silent" value="" />
      </test>
      <test>
          <param name="input" value="unix_sed_input1.txt" />
          <output name="output" file="unix_sed_output2.txt" />
          <param name="url_paste"  value="/foo/ { s/foo/baz/g ; p }" />
          <param name="silent" value="silent" />
      </test>
  </tests>
  <outputs>
    <data format="input" name="output" metadata_source="input" />
  </outputs> 
<help>

**What it does**

This tool runs the unix **sed** command on the selected data file.

.. class:: infomark

- **\|** Separates alternate possibilities. 


**Note**: SED uses extended regular expression syntax, not Perl syntax. **\\d**, **\\w**, **\\s** etc. are **not** supported.

</help>
</tool>

4:56e80527c482

<tool id="tp_sed_tool" name="Text transformation" version="@BASE_VERSION@.0">
    <description>with sed</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="4.2.2-sandbox">gnu_sed</requirement>
    </expand>
    <version_command>sed --version | head -n 1</version_command>
    <command>
<![CDATA[
        sed 
            --sandbox
            -r
            #if $adv_opts.adv_opts_selector == 'advanced':
                $adv_opts.silent
            #end if
            -f '$sed_script'
            '$infile'
        > '$output'
]]>
    </command>
    <inputs>
        <param format="txt" name="infile" type="data" label="File to process" />
        <param name="url_paste" type="text" area="true" size="5x35" label="SED Program" help="">
            <sanitizer>
                <valid initial="string.printable">
                    <remove value="&apos;"/>
                </valid>
            </sanitizer>
        </param>
        <conditional name="adv_opts">
            <param name="adv_opts_selector" type="select" label="Advanced Options">
              <option value="basic" selected="True">Hide Advanced Options</option>
              <option value="advanced">Show Advanced Options</option>
            </param>

                    <option value="">normal</option>
                    <option value="-n">silent</option>
                </param>
            </when>
        </conditional>
    </inputs>
    <configfiles>
        <configfile name="sed_script">
          $url_paste
        </configfile>
    </configfiles>
    <outputs>
        <data format="input" name="output" metadata_source="infile" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="unix_sed_input1.txt" />
            <param name="url_paste"  value="1d ; s/foo/bar/" />
            <param name="silent" value="" />
            <output name="output" file="unix_sed_output1.txt" />
        </test>
        <test>
            <param name="infile" value="unix_sed_input1.txt" />
            <param name="url_paste"  value="/foo/ { s/foo/baz/g ; p }" />
            <param name="silent" value="silent" />
            <output name="output" file="unix_sed_output2.txt" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

This tool runs the unix **sed** command on the selected data file.

.. class:: infomark

- **\|** Separates alternate possibilities. 


**Note**: SED uses extended regular expression syntax, not Perl syntax. **\\d**, **\\w**, **\\s** etc. are **not** supported.

@REFERENCES@
]]>
</help>
</tool>