Mercurial > repos > bgruening > text_processing

annotate unfold_column.py @ 11:e6d48dc4e6ba draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit d48f42b1c267c8ebfc50161ea764baed8ee66701-dirty
author bgruening
date Fri, 18 Mar 2016 15:18:21 -0400
parents c78b1767db2b
children 5fef6d08de83
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/usr/bin/env python
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3 import sys
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5 out = open(sys.argv[4], 'w+')
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c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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7 sep = sys.argv[3]
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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8 # un-sanitize Galaxy inputs
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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9 if sep == 'X':
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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10 sep = ';'
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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12 with open(sys.argv[1]) as handle:
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13 for line in handle:
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14 cols = line.split('\t')
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15 unfolding_column = int(sys.argv[2]) - 1
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16 column_content = cols[ unfolding_column ]
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c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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17 for elem in column_content.split( sep ):
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18 out.write( '\t'.join( cols[:unfolding_column] + [elem] + cols[unfolding_column+1:]) )
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19 out.close()