|
4
|
1 <tool id="tp_unfold_column_tool" name="Unfold" version="@BASE_VERSION@.0">
|
|
|
2 <description>columns from a table</description>
|
|
|
3 <macros>
|
|
|
4 <import>macros.xml</import>
|
|
|
5 </macros>
|
|
|
6 <expand macro="requirements" />
|
|
|
7 <command interpreter="python">
|
|
|
8 <![CDATA[
|
|
|
9 unfold_column.py
|
|
|
10 '${infile}'
|
|
|
11 $column
|
|
|
12 "$delimiter"
|
|
|
13 '${outfile}'
|
|
|
14 ]]>
|
|
|
15 </command>
|
|
|
16 <inputs>
|
|
|
17 <param name="infile" format="tabular" type="data" label="File to unfold" />
|
|
|
18 <param name="column" type="data_column" data_ref="infile" accept_default="true" label="Column to use for unfolding" />
|
|
|
19 <param name="delimiter" type="select" label="Values in column are delimited by">
|
|
|
20 <option value=" ">Whitespace</option>
|
|
|
21 <option value=".">Dot</option>
|
|
|
22 <option value=",">Comma</option>
|
|
|
23 <option value="-">Dash</option>
|
|
|
24 <option value="_">Underscore</option>
|
|
|
25 <option value="|">Pipe</option>
|
|
|
26 </param>
|
|
|
27 </inputs>
|
|
|
28 <outputs>
|
|
6
|
29 <data name="outfile" format_source="infile" metadata_source="infile" />
|
|
4
|
30 </outputs>
|
|
|
31 <tests>
|
|
|
32 <test>
|
|
|
33 <param name="infile" value="unfold_column1.tabular" ftype="tabular"/>
|
|
|
34 <param name="delimiter" value=" "/>
|
|
|
35 <param name="column" value="3"/>
|
|
|
36 <output name="outfile" file="unfold_column_result1.tabular" ftype="tabular"/>
|
|
|
37 </test>
|
|
|
38 </tests>
|
|
|
39 <help>
|
|
|
40 <![CDATA[
|
|
|
41 **What it does**
|
|
|
42
|
|
|
43 This tool will unfold one column of your input dataset.
|
|
|
44
|
|
|
45 -----
|
|
|
46
|
|
|
47 Input Example::
|
|
|
48
|
|
|
49 a b 1,2,3,4,5 c
|
|
|
50
|
|
|
51
|
|
|
52 Output Example::
|
|
|
53
|
|
|
54 a b 1 c
|
|
|
55 a b 2 c
|
|
|
56 a b 3 c
|
|
|
57 a b 4 c
|
|
|
58 a b 5 c
|
|
|
59
|
|
|
60 @REFERENCES@
|
|
|
61 ]]>
|
|
|
62 </help>
|
|
|
63 </tool>
|
