Mercurial > repos > bgruening > text_processing
annotate tac.xml @ 24:5fef6d08de83 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
| author | bgruening |
|---|---|
| date | Tue, 22 Jun 2021 16:03:26 +0000 |
| parents | 74aae7d6cb09 |
| children | f22a309187a3 |
| rev | line source |
|---|---|
| 7 | 1 <tool id="tp_tac" name="tac" version="@BASE_VERSION@.0"> |
| 2 <description>reverse a file (reverse cat)</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <version_command>tac --version | head -n 1</version_command> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 tac | |
| 11 #if str($separator.separator_select) == "yes": | |
| 12 $separator.before | |
| 13 $separator.regex | |
| 14 #if $separator.separator_string: | |
| 15 "$separator.separator_string" | |
| 16 #end if | |
| 17 #end if | |
| 18 "$infile" | |
| 19 > "$outfile" | |
| 20 ]]> | |
| 21 </command> | |
| 22 <inputs> | |
| 23 <param name="infile" type="data" format="txt" label="Input file"/> | |
| 24 <conditional name="separator"> | |
| 25 <param name="separator_select" type="select" label="Do you want to use a separator other than newline?"> | |
| 26 <option value="no">No</option> | |
| 27 <option value="yes">Yes</option> | |
| 28 </param> | |
| 29 <when value="no" /> | |
| 30 <when value="yes"> | |
| 31 <param name="before" type="boolean" truevalue="-b" falsevalue="" checked="True" | |
| 32 label="Attach the separator before instead of after" help="(--before)"/> | |
| 33 <param name="regex" type="boolean" truevalue="-r" falsevalue="" checked="True" | |
| 34 label="Interpret the separator as a regular expression" help="(--regex)"/> | |
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c78b1767db2b
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
7
diff
changeset
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35 <param name="separator_string" type="text" value="" |
| 7 | 36 label="Separator to use" help="(--separator)" /> |
| 37 </when> | |
| 38 </conditional> | |
| 39 </inputs> | |
| 40 <outputs> | |
| 41 <data name="outfile" format_source="infile" metadata_source="infile"/> | |
| 42 </outputs> | |
| 43 <tests> | |
| 44 <test> | |
| 45 <param name="infile" value="1.bed"/> | |
| 46 <output name="outfile" file="tac_result1.txt"/> | |
| 47 </test> | |
| 48 <test> | |
| 49 <param name="infile" value="1.bed"/> | |
| 50 <param name="separator_select" value="yes"/> | |
| 51 <param name="before" value="True"/> | |
| 52 <output name="outfile" file="tac_result2.txt"/> | |
| 53 </test> | |
| 54 </tests> | |
| 55 <help> | |
| 56 <![CDATA[ | |
| 57 **What it does** | |
| 58 | |
| 59 tac is a Linux command that allows you to see a file line-by-line backwards. It is named by analogy with cat. | |
| 60 | |
| 61 Mandatory arguments to long options are mandatory for short options too: | |
| 62 | |
| 63 -b, --before attach the separator before instead of after | |
| 64 -r, --regex interpret the separator as a regular expression | |
| 65 -s, --separator=STRING use STRING as the separator instead of newline | |
| 66 | |
| 67 ----- | |
| 68 | |
| 69 **Example** | |
| 70 | |
| 71 Input file: | |
| 72 | |
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74aae7d6cb09
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
14
diff
changeset
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73 0 1 2 3 4 5 # 6 7 8 9 |
| 7 | 74 |
| 75 | |
| 76 default settings: | |
| 77 | |
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15
74aae7d6cb09
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
14
diff
changeset
|
78 9 8 7 6 # 5 4 3 2 1 0 |
| 7 | 79 |
| 80 with option -s 5: | |
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15
74aae7d6cb09
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
14
diff
changeset
|
81 |
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74aae7d6cb09
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
14
diff
changeset
|
82 # 6 7 8 9 0 1 2 3 4 5 |
| 7 | 83 |
| 84 with option -b and -s 5: | |
| 85 | |
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15
74aae7d6cb09
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
14
diff
changeset
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86 5 # 6 7 8 9 0 1 2 3 4 |
| 7 | 87 |
| 88 @REFERENCES@ | |
| 89 ]]> | |
| 90 </help> | |
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7725ab6dab67
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
bgruening
parents:
10
diff
changeset
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91 <expand macro="citations" /> |
| 7 | 92 </tool> |