Mercurial > repos > bgruening > text_processing

annotate unfold_column.py @ 12:062ed2bb4f2e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit f8896018f5b980a456c4ceaffe0ed457dc80b5a8
author bgruening
date Thu, 02 Jun 2016 08:58:39 -0400
parents c78b1767db2b
children 5fef6d08de83
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
56e80527c482 Uploaded
bgruening
parents:
diff changeset
1 #!/usr/bin/env python
56e80527c482 Uploaded
bgruening
parents:
diff changeset
2
56e80527c482 Uploaded
bgruening
parents:
diff changeset
3 import sys
56e80527c482 Uploaded
bgruening
parents:
diff changeset
4
56e80527c482 Uploaded
bgruening
parents:
diff changeset
5 out = open(sys.argv[4], 'w+')
56e80527c482 Uploaded
bgruening
parents:
diff changeset
6
10
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
7 sep = sys.argv[3]
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
8 # un-sanitize Galaxy inputs
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
9 if sep == 'X':
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
10 sep = ';'
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
11
4
56e80527c482 Uploaded
bgruening
parents:
diff changeset
12 with open(sys.argv[1]) as handle:
56e80527c482 Uploaded
bgruening
parents:
diff changeset
13 for line in handle:
56e80527c482 Uploaded
bgruening
parents:
diff changeset
14 cols = line.split('\t')
56e80527c482 Uploaded
bgruening
parents:
diff changeset
15 unfolding_column = int(sys.argv[2]) - 1
56e80527c482 Uploaded
bgruening
parents:
diff changeset
16 column_content = cols[ unfolding_column ]
10
c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents: 4
diff changeset
17 for elem in column_content.split( sep ):
4
56e80527c482 Uploaded
bgruening
parents:
diff changeset
18 out.write( '\t'.join( cols[:unfolding_column] + [elem] + cols[unfolding_column+1:]) )
56e80527c482 Uploaded
bgruening
parents:
diff changeset
19 out.close()