comparison label_encoder.py @ 14:0edcdeaad6f4 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 80417bf0158a9b596e485dd66408f738f405145a
author bgruening
date Mon, 02 Oct 2023 09:12:23 +0000
parents 022e85ead64f
children
comparison
equal deleted inserted replaced
13:d8befad42290 14:0edcdeaad6f4
19 19
20 outfile : str 20 outfile : str
21 File path to output vector 21 File path to output vector
22 22
23 """ 23 """
24 warnings.simplefilter('ignore') 24 warnings.simplefilter("ignore")
25 25
26 with open(inputs, 'r') as param_handler: 26 with open(inputs, "r") as param_handler:
27 params = json.load(param_handler) 27 params = json.load(param_handler)
28 28
29 input_header = params['header0'] 29 input_header = params["header0"]
30 header = 'infer' if input_header else None 30 header = "infer" if input_header else None
31 31
32 input_vector = pd.read_csv(infile, sep='\t', header=header) 32 input_vector = pd.read_csv(infile, sep="\t", header=header)
33 33
34 le = LabelEncoder() 34 le = LabelEncoder()
35 35
36 output_vector = le.fit_transform(input_vector) 36 output_vector = le.fit_transform(input_vector)
37 37
38 np.savetxt(outfile, output_vector, fmt="%d", delimiter='\t') 38 np.savetxt(outfile, output_vector, fmt="%d", delimiter="\t")
39 39
40 40
41 if __name__ == '__main__': 41 if __name__ == "__main__":
42 aparser = argparse.ArgumentParser() 42 aparser = argparse.ArgumentParser()
43 aparser.add_argument("-i", "--inputs", dest="inputs", required=True) 43 aparser.add_argument("-i", "--inputs", dest="inputs", required=True)
44 aparser.add_argument("-y", "--infile", dest="infile") 44 aparser.add_argument("-y", "--infile", dest="infile")
45 aparser.add_argument("-o", "--outfile", dest="outfile") 45 aparser.add_argument("-o", "--outfile", dest="outfile")
46 args = aparser.parse_args() 46 args = aparser.parse_args()