Mercurial > repos > bgruening > sklearn_regression_metrics
comparison regression_metrics.xml @ 4:ef365d71514e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
| author | bgruening |
|---|---|
| date | Wed, 06 Jun 2018 17:39:49 -0400 |
| parents | c5feb1a67e9b |
| children | 3ce5d492b568 |
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| 3:c5feb1a67e9b | 4:ef365d71514e |
|---|---|
| 26 input_json_path = sys.argv[1] | 26 input_json_path = sys.argv[1] |
| 27 params = json.load(open(input_json_path, "r")) | 27 params = json.load(open(input_json_path, "r")) |
| 28 | 28 |
| 29 header='infer' if params["regression_metrics"]["header1"] else None | 29 header='infer' if params["regression_metrics"]["header1"] else None |
| 30 column_option = params["regression_metrics"]["column_selector_options_1"]["selected_column_selector_option"] | 30 column_option = params["regression_metrics"]["column_selector_options_1"]["selected_column_selector_option"] |
| 31 if column_option == "by_index_number": | 31 if column_option in ["by_index_number", "all_but_by_index_number"]: |
| 32 c = params["regression_metrics"]["column_selector_options_1"]["col1"] | 32 c = params["regression_metrics"]["column_selector_options_1"]["col1"] |
| 33 else: | 33 else: |
| 34 c = None | 34 c = None |
| 35 y_t = read_columns( | 35 y_t = read_columns( |
| 36 "$regression_metrics.infile1", | 36 "$regression_metrics.infile1", |
| 41 parse_dates=True | 41 parse_dates=True |
| 42 ) | 42 ) |
| 43 | 43 |
| 44 header='infer' if params["regression_metrics"]["header2"] else None | 44 header='infer' if params["regression_metrics"]["header2"] else None |
| 45 column_option = params["regression_metrics"]["column_selector_options_2"]["selected_column_selector_option2"] | 45 column_option = params["regression_metrics"]["column_selector_options_2"]["selected_column_selector_option2"] |
| 46 if column_option == "by_index_number": | 46 if column_option in ["by_index_number", "all_but_by_index_number"]: |
| 47 c = params["regression_metrics"]["column_selector_options_2"]["col2"] | 47 c = params["regression_metrics"]["column_selector_options_2"]["col2"] |
| 48 else: | 48 else: |
| 49 c = None | 49 c = None |
| 50 y_p = read_columns( | 50 y_p = read_columns( |
| 51 "$regression_metrics.infile2", | 51 "$regression_metrics.infile2", |
| 165 </test> | 165 </test> |
| 166 <test> | 166 <test> |
| 167 <param name="selected_metric" value="median_absolute_error"/> | 167 <param name="selected_metric" value="median_absolute_error"/> |
| 168 <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/> | 168 <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/> |
| 169 <param name="header1" value="True"/> | 169 <param name="header1" value="True"/> |
| 170 <param name="col1" value="1"/> | 170 <param name="selected_column_selector_option" value="all_but_by_index_number"/> |
| 171 <param name="col1" value="2"/> | |
| 171 <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/> | 172 <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/> |
| 172 <param name="header2" value="True"/> | 173 <param name="header2" value="True"/> |
| 173 <param name="col2" value="2"/> | 174 <param name="col2" value="2"/> |
| 174 <output name="outfile" file="regression_metrics_result05"/> | 175 <output name="outfile" file="regression_metrics_result05"/> |
| 175 </test> | 176 </test> |
| 178 <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/> | 179 <param name="infile1" value="regression_test_y.tabular" ftype="tabular"/> |
| 179 <param name="header1" value="True"/> | 180 <param name="header1" value="True"/> |
| 180 <param name="col1" value="1"/> | 181 <param name="col1" value="1"/> |
| 181 <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/> | 182 <param name="infile2" value="regression_test_y.tabular" ftype="tabular"/> |
| 182 <param name="header2" value="True"/> | 183 <param name="header2" value="True"/> |
| 183 <param name="col2" value="2"/> | 184 <param name="selected_column_selector_option2" value="all_but_by_index_number"/> |
| 185 <param name="col2" value="1"/> | |
| 184 <output name="outfile" file="regression_metrics_result06"/> | 186 <output name="outfile" file="regression_metrics_result06"/> |
| 185 </test> | 187 </test> |
| 186 </tests> | 188 </tests> |
| 187 <help> | 189 <help> |
| 188 <![CDATA[ | 190 <![CDATA[ |