diff pairwise_metrics.xml @ 19:49e5ce162e0e draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48

--- a/pairwise_metrics.xml	Tue Jul 10 03:05:50 2018 -0400
+++ b/pairwise_metrics.xml	Fri Jul 13 03:49:46 2018 -0400
@@ -22,10 +22,11 @@
 from sklearn.metrics import pairwise
 from sklearn.metrics import pairwise_distances_argmin
 from scipy.io import mmread
-from scipy.io import mmwrite
 
 input_json_path = sys.argv[1]
-params = json.load(open(input_json_path, "r"))
+with open(input_json_path, "r") as param_handler:
+    params = json.load(param_handler)
+
 
 options = params["input_type"]["metric_functions"]["options"]
 metric_function = params["input_type"]["metric_functions"]["selected_metric_function"]
@@ -35,7 +36,7 @@
 input_index=$i
 input_path="${s.input.file_name}"
 #if $input_type.selected_input_type == "sparse":
-input_iter.append(mmread(open(input_path, 'r')))
+input_iter.append(mmread(input_path))
 #else:
 input_iter.append(pandas.read_csv(input_path, sep='\t', header=0, index_col=None, parse_dates=True, encoding=None, tupleize_cols=False ).values)
 #end if