Mercurial > repos > bgruening > sklearn_numeric_clustering
comparison numeric_clustering.xml @ 32:a36e1455971d draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
author | bgruening |
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date | Fri, 09 Aug 2019 06:19:29 -0400 |
parents | 60d80322e1e9 |
children | 80bb86a40de6 |
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31:faa3d0b9d1a6 | 32:a36e1455971d |
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17 import sys | 17 import sys |
18 import json | 18 import json |
19 import numpy as np | 19 import numpy as np |
20 import sklearn.cluster | 20 import sklearn.cluster |
21 import pandas | 21 import pandas |
22 | |
22 from sklearn import metrics | 23 from sklearn import metrics |
23 from scipy.io import mmread | 24 from scipy.io import mmread |
24 | 25 from galaxy_ml.utils import read_columns |
25 sys.path.insert(0, '$__tool_directory__') | 26 |
26 from utils import read_columns | |
27 | 27 |
28 N_JOBS = int(__import__('os').environ.get('GALAXY_SLOTS', 1)) | 28 N_JOBS = int(__import__('os').environ.get('GALAXY_SLOTS', 1)) |
29 | 29 |
30 input_json_path = sys.argv[1] | 30 input_json_path = sys.argv[1] |
31 with open(input_json_path, "r") as param_handler: | 31 with open(input_json_path, "r") as param_handler: |