comparison discriminant.xml @ 29:f981bbb3548b draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author bgruening
date Tue, 14 May 2019 17:55:24 -0400
parents 997fef0af711
children 3b7219e0c6cf
comparison
equal deleted inserted replaced
28:997fef0af711 29:f981bbb3548b
13 </command> 13 </command>
14 <configfiles> 14 <configfiles>
15 <inputs name="inputs"/> 15 <inputs name="inputs"/>
16 <configfile name="discriminant_script"> 16 <configfile name="discriminant_script">
17 <![CDATA[ 17 <![CDATA[
18 import sys
19 import json 18 import json
20 import numpy as np 19 import numpy as np
20 import pandas
21 import pickle
21 import sklearn.discriminant_analysis 22 import sklearn.discriminant_analysis
22 import pandas 23 import sys
23 24
24 with open("$__tool_directory__/sk_whitelist.json", "r") as f: 25 sys.path.insert(0, '$__tool_directory__')
25 sk_whitelist = json.load(f) 26 from utils import load_model, get_X_y
26 exec(open("$__tool_directory__/utils.py").read(), globals())
27 27
28 input_json_path = sys.argv[1] 28 input_json_path = sys.argv[1]
29 with open(input_json_path, "r") as param_handler: 29 with open(input_json_path, "r") as param_handler:
30 params = json.load(param_handler) 30 params = json.load(param_handler)
31 31