Mercurial > repos > bgruening > sklearn_clf_metrics
comparison clf_metrics.xml @ 8:f361aac67330 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
| author | bgruening |
|---|---|
| date | Sat, 28 Apr 2018 18:04:42 -0400 |
| parents | 6d1b3653d6a6 |
| children | 3fb4723f5033 |
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| 7:605bc15de5db | 8:f361aac67330 |
|---|---|
| 24 @COLUMNS_FUNCTION@ | 24 @COLUMNS_FUNCTION@ |
| 25 | 25 |
| 26 input_json_path = sys.argv[1] | 26 input_json_path = sys.argv[1] |
| 27 params = json.load(open(input_json_path, "r")) | 27 params = json.load(open(input_json_path, "r")) |
| 28 | 28 |
| 29 | 29 header='infer' if params["clf_metrics"].get("header1", None) else None |
| 30 y_t = read_columns( | 30 y_t = read_columns( |
| 31 "$clf_metrics.infile1", | 31 "$clf_metrics.infile1", |
| 32 "$clf_metrics.col1", | 32 "$clf_metrics.col1", |
| 33 sep='\t', | 33 sep='\t', |
| 34 header=None, | 34 header=header, |
| 35 parse_dates=True | 35 parse_dates=True |
| 36 ) | 36 ) |
| 37 | |
| 38 header='infer' if params["clf_metrics"].get("header2", None) else None | |
| 37 y_p = read_columns( | 39 y_p = read_columns( |
| 38 "$clf_metrics.infile2", | 40 "$clf_metrics.infile2", |
| 39 "$clf_metrics.col2", | 41 "$clf_metrics.col2", |
| 40 sep='\t', | 42 sep='\t', |
| 41 header=None, | 43 header=header, |
| 42 parse_dates=True | 44 parse_dates=True |
| 43 ) | 45 ) |
| 44 | 46 |
| 45 options = params["clf_metrics"].get("options", {}) | 47 options = params["clf_metrics"].get("options", {}) |
| 46 print(options) | 48 print(options) |