Mercurial > repos > bgruening > sklearn_clf_metrics

comparison clf_metrics.xml @ 13:86d990d8277f draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
author bgruening
date Sun, 01 Jul 2018 03:16:29 -0400
parents cf91db94623c
children 6f94f6805db4
comparison
equal deleted inserted replaced
12:cf91db94623c 13:86d990d8277f
26 input_json_path = sys.argv[1] 26 input_json_path = sys.argv[1]
27 params = json.load(open(input_json_path, "r")) 27 params = json.load(open(input_json_path, "r"))
28 28
29 header='infer' if params["clf_metrics"].get("header1", None) else None 29 header='infer' if params["clf_metrics"].get("header1", None) else None
30 column_option = params["clf_metrics"]["column_selector_options_1"]["selected_column_selector_option"] 30 column_option = params["clf_metrics"]["column_selector_options_1"]["selected_column_selector_option"]
31 if column_option in ["by_index_number", "all_but_by_index_number"]: 31 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]:
32 c = params["clf_metrics"]["column_selector_options_1"]["col1"] 32 c = params["clf_metrics"]["column_selector_options_1"]["col1"]
33 else: 33 else:
34 c = None 34 c = None
35 y_t = read_columns( 35 y_t = read_columns(
36 "$clf_metrics.infile1", 36 "$clf_metrics.infile1",
41 parse_dates=True 41 parse_dates=True
42 ) 42 )
43 43
44 header='infer' if params["clf_metrics"].get("header2", None) else None 44 header='infer' if params["clf_metrics"].get("header2", None) else None
45 column_option = params["clf_metrics"]["column_selector_options_2"]["selected_column_selector_option2"] 45 column_option = params["clf_metrics"]["column_selector_options_2"]["selected_column_selector_option2"]
46 if column_option in ["by_index_number", "all_but_by_index_number"]: 46 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]:
47 c = params["clf_metrics"]["column_selector_options_2"]["col2"] 47 c = params["clf_metrics"]["column_selector_options_2"]["col2"]
48 else: 48 else:
49 c = None 49 c = None
50 y_p = read_columns( 50 y_p = read_columns(
51 "$clf_metrics.infile2", 51 "$clf_metrics.infile2",