Mercurial > repos > bgruening > silicos_it

changeset 7:94294cfe0614

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Uploaded
author bgruening
date Thu, 23 May 2013 17:30:47 -0400
parents a3dfd1432e43
children 147814e45209
files repository_dependencies.xml tool_dependencies.xml
diffstat 2 files changed, 11 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Tue May 14 17:04:37 2013 -0400
+++ b/repository_dependencies.xml	Thu May 23 17:30:47 2013 -0400
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="This requires the Molecule datatype definitions (e.g. SMILES, InChI, SD-format).">
-    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="molecule_datatypes" owner="bgruening" changeset_revision="1b63345907ec" />
-</repositories> 
+    <repository changeset_revision="bd886859b184" name="molecule_datatypes" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+</repositories>
--- a/tool_dependencies.xml	Tue May 14 17:04:37 2013 -0400
+++ b/tool_dependencies.xml	Thu May 23 17:30:47 2013 -0400
@@ -1,12 +1,13 @@
+<?xml version="1.0"?>
 <tool_dependency>
     <package name="numpy" version="1.7.1">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_numpy_1_7" owner="bgruening" changeset_revision="ec80bba4bccb" prior_installation_required="True" />
+        <repository changeset_revision="7283651b62fe" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="openbabel" version="2.3.2">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="dc6a907dd737" prior_installation_required="True" />
+        <repository changeset_revision="ccda1b8ebc72" name="package_openbabel_2_3" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="rdkit" version="2012_12_1">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_rdkit_2012_12" owner="bgruening" changeset_revision="158956be0623" prior_installation_required="True" />
+        <repository changeset_revision="5685fab7ecc2" name="package_rdkit_2012_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="silicos_it" version="1.0.0">
         <install version="1.0">
@@ -18,10 +19,11 @@
                     $OPENBABEL_INCLUDE_DIR and $OPENBABEL_LIB_DIR
                 -->
                 <action type="set_environment_for_install">
-                    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="dc6a907dd737">
+                    <repository changeset_revision="ccda1b8ebc72" name="package_openbabel_2_3" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="openbabel" version="2.3.2" />
                     </repository>
                 </action>
+
                 <!--compiling strip-it -->
                 <action type="shell_command">
                     cd strip-it-1.0.1 &amp;&amp;
@@ -29,7 +31,7 @@
                     make  &amp;&amp;
                     make install</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/strip-it/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/strip-it/bin</environment_variable>
                 </action>
 
                 <!-- compiling align-it -->
@@ -40,7 +42,7 @@
                     make &amp;&amp; 
                     make install</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/align-it/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/align-it/bin</environment_variable>
                 </action>
 
                 <!-- compiling shape-it -->
@@ -51,7 +53,7 @@
                     make &amp;&amp; 
                     make install</action>
                 <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/shape-it/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/shape-it/bin</environment_variable>
                 </action>
 
             </actions>