# HG changeset patch
# User Bjoern Gruening <bjoern.gruening@gmail.com>
# Date 1374584052 -7200
# Node ID 1c218c2a4bd812f025f7f865d38afb01f0263eaa
# Parent  405b198f63799d87963fe30df9f05b8fe413638c
ChemicalToolBoX update.

diff -r 405b198f6379 -r 1c218c2a4bd8 repository_dependencies.xml
--- a/repository_dependencies.xml	Tue Jul 23 01:02:34 2013 +0200
+++ b/repository_dependencies.xml	Tue Jul 23 14:54:12 2013 +0200
@@ -1,4 +1,4 @@
 <?xml version='1.0' encoding='utf-8'?>
 <repositories description="This requires the Molecule datatype definitions (e.g. SMILES, InChI, SD-format).">
-    <repository changeset_revision="e6493849afd3" name="molecule_datatypes" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    <repository changeset_revision="18ff2d6e1dca" name="molecule_datatypes" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
 </repositories>
\ No newline at end of file
diff -r 405b198f6379 -r 1c218c2a4bd8 strip-it/strip-it.xml
--- a/strip-it/strip-it.xml	Tue Jul 23 01:02:34 2013 +0200
+++ b/strip-it/strip-it.xml	Tue Jul 23 14:54:12 2013 +0200
@@ -47,9 +47,7 @@
 
 .. class:: infomark
 
-<<<<<<< HEAD
-http://www.silicos-it.com/software/strip-it/1.0.2/strip-it.html
-=======
+
 **Input**
 
 | - `SD-Format`_
@@ -59,7 +57,7 @@
 .. _SD-Format: http://en.wikipedia.org/wiki/Chemical_table_file
 .. _SMILES Format: http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification
 .. _MOL2 Format: http://www.tripos.com/data/support/mol2.pdf
->>>>>>> 67ce87e8ccf30f81f72248a7fde0896c5e9ae953
+
 
 -----
 
diff -r 405b198f6379 -r 1c218c2a4bd8 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jul 23 01:02:34 2013 +0200
+++ b/tool_dependencies.xml	Tue Jul 23 14:54:12 2013 +0200
@@ -12,7 +12,7 @@
     <package name="silicos_it" version="1.0.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://github.com/bgruening/silicos-it_store/blob/master/strip-it/strip-it-1.0.2.tar.gz</action>
+                <action type="download_by_url">https://github.com/bgruening/silicos-it_store/raw/master/strip-it/strip-it-1.0.2.tar.gz</action>
 
                 <!-- populate the environment variables from the dependend repos 
                     $OPENBABEL_INCLUDE_DIR and $OPENBABEL_LIB_DIR
@@ -25,7 +25,6 @@
 
                 <!--compiling strip-it -->
                 <action type="shell_command">
-                    cd strip-it-1.0.2 &amp;&amp;
                     cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/strip-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so &amp;&amp; 
                     make  &amp;&amp;
                     make install</action>