Mercurial > repos > bgruening > silicos_it
view tool_dependencies.xml @ 2:4ac14b5bacf1
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author | bgruening |
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date | Fri, 26 Apr 2013 09:05:20 -0400 |
parents | 54edf22c93c0 |
children | b5abf2862e97 |
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<tool_dependency> <package name="numpy" version="1.7.1"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_numpy_1_7" owner="bgruening" changeset_revision="c3041382815c" prior_installation_required="True" /> </package> <package name="openbabel" version="2.3.2"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="6fd6b904eeff" prior_installation_required="True" /> </package> <package name="rdkit" version="2012_12_1"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_rdkit_2012_12" owner="bgruening" changeset_revision="0adc830e7d71" /> </package> <package name="silicos_it" version="1.0.0"> <install version="1.0"> <actions> <!-- first action is always downloading --> <action type="download_by_url">http://www.silicos-it.com/_php/download.php?file=strip-it-1.0.1.tar.gz</action> <!-- populate the environment variables from the dependend repos $OPENBABEL_INCLUDE_DIR and $OPENBABEL_LIB_DIR --> <action type="set_environment_for_install"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="6fd6b904eeff"> <package name="openbabel" version="2.3.2" /> </repository> </action> <!--compiling strip-it --> <action type="shell_command"> cd strip-it-1.0.1 && cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/strip-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/strip-it/bin</environment_variable> </action> <!-- compiling align-it --> <action type="shell_command">wget http://www.silicos-it.com/_php/download.php?file=align-it-1.0.3.tar.gz</action> <action type="shell_command">tar xfvz download.php?file=align-it-1.0.3.tar.gz && cd align-it-1.0.3 && cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/align-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/align-it/bin</environment_variable> </action> <!-- compiling shape-it --> <action type="shell_command">wget http://www.silicos-it.com/_php/download.php?file=shape-it-1.0.1.tar.gz</action> <action type="shell_command">tar xfvz download.php?file=shape-it-1.0.1.tar.gz && cd shape-it-1.0.1 && cmake . -DOPENBABEL2_INCLUDE_DIRS=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/shape-it/ -DOPENBABEL2_LIBRARIES=$OPENBABEL_LIB_DIR/libopenbabel.so && make && make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/shape-it/bin</environment_variable> </action> </actions> </install> <readme>Compiling silicos-it requires g++ and CMake 2.4+.</readme> </package> </tool_dependency>