comparison sparse.xml @ 20:01c0f1b60556 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48

19:431aaea47521

from scipy import sparse
from scipy.io import mmread
from scipy.io import mmwrite

input_json_path = sys.argv[1]
params = json.load(open(input_json_path, "r"))

sparse_iter = []
#for $i, $s in enumerate( $sparse_functions.sparse_inputs )
sparse_index=$i
sparse_path="${s.input.file_name}"
sparse_iter.append(mmread(open(sparse_path, 'r')))
#end for

my_function = getattr(sparse, params["sparse_functions"]["selected_function"])
my_sparse = my_function(sparse_iter)
mmwrite(open("$outfile", 'w+'), my_sparse) 
            ]]>
        </configfile>
    </configfiles>
    <inputs>
        <conditional name="sparse_functions">

20:01c0f1b60556

from scipy import sparse
from scipy.io import mmread
from scipy.io import mmwrite

input_json_path = sys.argv[1]
with open(input_json_path, "r") as param_handler:
    params = json.load(param_handler)

sparse_iter = []
#for $i, $s in enumerate( $sparse_functions.sparse_inputs )
sparse_index=$i
sparse_path="${s.input.file_name}"
sparse_iter.append(mmread(sparse_path))
#end for

my_function = getattr(sparse, params["sparse_functions"]["selected_function"])
my_sparse = my_function(sparse_iter)
with open("$outfile", "w+") as out_handler:
    mmwrite(out_handler, my_sparse)
            ]]>
        </configfile>
    </configfiles>
    <inputs>
        <conditional name="sparse_functions">