Mercurial > repos > bgruening > salmonquantmerge
changeset 3:c30842f419ce draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 30fe16f7d786e4b0c43b8333853fc56c59f6c664"
| author | bgruening |
|---|---|
| date | Sat, 25 Apr 2020 15:44:35 +0000 |
| parents | 7c618ec039b8 |
| children | 362ba03406b4 |
| files | macros.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Tue Oct 15 11:59:28 2019 -0400 +++ b/macros.xml Sat Apr 25 15:44:35 2020 +0000 @@ -4,12 +4,10 @@ <token name="@IDX_VERSION@">q6</token> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.6">bzip2</requirement> - <requirement type="package" version="1.2">seqtk</requirement> + <requirement type="package" version="1.3">seqtk</requirement> <requirement type="package" version="0.14.1">salmon</requirement> - <requirement type="package" version="1.9">samtools</requirement> + <requirement type="package" version="1.10">samtools</requirement> <requirement type="package" version="0.2.0">vpolo</requirement> - <requirement type="package" version="1.17.2">numpy</requirement> <requirement type="package" version="0.25.1">pandas</requirement> <requirement type="package" version="1.3.1">scipy</requirement> </requirements> @@ -286,6 +284,7 @@ <citation type="doi">10.1038/nmeth.4197</citation> </citations> </xml> + <token name="@bam_sort@"><![CDATA[samtools sort -@ \${GALAXY_SLOTS} --output-fmt=BAM -o ./output/bamout.bam]]></token> <token name="@indexing@"><![CDATA[ mkdir ./index && mkdir ./output &&