Mercurial > repos > bgruening > salmon
comparison umiout.sh @ 14:dc35ae3a672e draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit c17bc974bf9bbaa1fc1e47ea72162fd244f0e612"
| author | bgruening |
|---|---|
| date | Tue, 15 Oct 2019 11:58:54 -0400 (2019-10-15) |
| parents | |
| children |
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| 13:d95fac04c472 | 14:dc35ae3a672e |
|---|---|
| 1 #!/usr/bin/bash | |
| 2 | |
| 3 mkdir fixed; | |
| 4 for file in ./umiout/*; | |
| 5 do prefix="${file%.dot.gz}"; | |
| 6 prefix=${prefix/.\/umiout\//}; | |
| 7 gunzip $file; | |
| 8 sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot; | |
| 9 dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf; | |
| 10 done | |
| 11 ls fixed |