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comparison salmon.xml @ 3:0b689bf9473c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f
author bgruening
date Thu, 02 Feb 2017 19:37:14 -0500
parents 22cb19d12fcc
children 979bff04ae7d
comparison
equal deleted inserted replaced
2:d0527124e909 3:0b689bf9473c
26 <version_command>salmon -version</version_command> 26 <version_command>salmon -version</version_command>
27 <command><![CDATA[ 27 <command><![CDATA[
28 mkdir ./index 28 mkdir ./index
29 && 29 &&
30 mkdir ./output 30 mkdir ./output
31 &&
32 #if $refTranscriptSource.TranscriptSource == "history": 31 #if $refTranscriptSource.TranscriptSource == "history":
32 &&
33 salmon index 33 salmon index
34 --transcripts $refTranscriptSource.ownFile 34 --transcripts $refTranscriptSource.ownFile
35 --kmerLen $refTranscriptSource.kmerLen 35 --kmerLen $refTranscriptSource.kmerLen
36 --threads "\${GALAXY_SLOTS:-4}" 36 --threads "\${GALAXY_SLOTS:-4}"
37 --index './index' 37 --index './index'