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annotate test-data/cached_locally/prebuilt_index/quasi_index.log @ 15:818b16dd05a1 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 30fe16f7d786e4b0c43b8333853fc56c59f6c664"
author bgruening
date Sat, 25 Apr 2020 15:44:01 +0000 (2020-04-25)
parents 2e3425b9f01d
children
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12
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
1 [2019-09-08 20:35:10.409] [jointLog] [info] [Step 1 of 4] : counting k-mers
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
2 [2019-09-08 20:35:10.412] [jointLog] [info] Replaced 0 non-ATCG nucleotides
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
3 [2019-09-08 20:35:10.412] [jointLog] [info] Clipped poly-A tails from 0 transcripts
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
4 [2019-09-08 20:35:10.412] [jointLog] [info] Building rank-select dictionary and saving to disk
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
5 [2019-09-08 20:35:10.412] [jointLog] [info] done
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
6 [2019-09-08 20:35:10.412] [jointLog] [info] Writing sequence data to file . . .
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
7 [2019-09-08 20:35:10.412] [jointLog] [info] done
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
8 [2019-09-08 20:35:10.412] [jointLog] [info] Building 32-bit suffix array (length of generalized text is 28,577)
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
9 [2019-09-08 20:35:10.413] [jointLog] [info] Building suffix array . . .
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
10 [2019-09-08 20:35:10.445] [jointLog] [info] khash had 18,902 keys
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
11 [2019-09-08 20:35:10.445] [jointLog] [info] saving hash to disk . . .
2e3425b9f01d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 06db9bd0914a60c3ddc0a1f77de0d6f731b56e02"
bgruening
parents: 11
diff changeset
12 [2019-09-08 20:35:10.447] [jointLog] [info] done